PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g11090
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 1279aa    MW: 140754 Da    PI: 6.7291
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g11090genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-0612581279426
                 ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                 ++C+ f+++G+Ck G++C+F H+
  Tp5g11090 1258 KICK-FYESGYCKKGASCSFWHP 1279
                 6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.5E-9102162IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579033.77E-7103159IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.591107173IPR019787Zinc finger, PHD-finger
SMARTSM002499.1E-7109155IPR001965Zinc finger, PHD-type
CDDcd155683.74E-19109154No hitNo description
PROSITE patternPS013590110170IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475922.83E-20315392IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.9E-22316398IPR003121SWIB/MDM2 domain
SMARTSM001510.0021317396IPR019835SWIB domain
PfamPF022018.1E-13320391IPR003121SWIB/MDM2 domain
PROSITE profilePS5136019.193450583IPR004343Plus-3 domain
SMARTSM007194.4E-48450560IPR004343Plus-3 domain
SuperFamilySSF1590422.88E-26451579IPR004343Plus-3 domain
PfamPF031261.8E-17455558IPR004343Plus-3 domain
SuperFamilySSF552779.94E-16712767IPR003169GYF domain
PROSITE profilePS5082915.251714768IPR003169GYF domain
SMARTSM004443.8E-15715770IPR003169GYF domain
CDDcd000724.02E-19715771No hitNo description
Gene3DG3DSA:3.30.1490.407.6E-17716768IPR003169GYF domain
PfamPF022132.9E-11716760IPR003169GYF domain
PROSITE profilePS5010314.11712541279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.81E-612541278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-412581278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1279 aa     Download sequence    Send to blast
MENQQKRLQQ GEPELAALAR GEESSVRGID LMRVDQCEEI GVTQPPAPSV PAPTLGGTVG  60
VSIEKEATVA DEAAPVKRKR GRPPRALAKT PTQTRPQPPP RKDDKEEDVC FICFDGGDLV  120
LCDRRNCPKA YHPACIKRDE AFFRTTAKWN CGWHICGTCQ KASSYMCYTC TFSVCKRCIK  180
DADYVIVRGN MGLCGTCTKP IMLIENIAQG DNEAVKVDFD DKLSWEYLFK VYWLCLKEEL  240
SLTVDELTRA NNPWKEVPYT APKVESRNDH TRNKALDVAV NGSKRRRTGD SPTVPSKLDA  300
KNPSKILKKL PGDTNWATKE LLEFLSFMRN GDTSVLSQFD VQGLLLDYIT KKNLRDPLQK  360
SQVICDLMLV KLFGKQRVGH FEMLKLLESH FLIQEKTKDD RIANGETIYA VPSQIEEDSV  420
HDPPVRDRRR KVRRKTDGRV QNENLDAYAA IDVHNINLIY LRRKFLETLL DDINKVHEKV  480
VGTILRIKVS GSDQKLDIHR LVQVVGTSKA AASYQLGAKT TDVMLEILNL DKREVISIDQ  540
LSDQNVTEDE CKRLRQSIKC GLNKRLTVGD ILKTAKTLQA MRINEALEAE ILKFKHLRDR  600
AKKLGLLESP EEHQRLLQEV PEVHTDPSMD PSHASAEDAG LGTRKQDNHI KAQGKGPQKK  660
GDILNNLGNN EQKKYDAPIL RSRNVVHATN KDDCSKVHNN TSDIQESGKD DEEIEIWHYR  720
DPTGKTQGPF SMVQLRRWKS SGHFPPYLKI WKAHENQDES VLLTDALAGR FDKAITLPSS  780
SLLPQELKPS PQDSGRTGVD VNYLQKNLTP VSTSATSSSS STTVSTLPYD PKEKQVATLV  840
PCSEKVEDGN SACPQPQVSC PASMFVVAGR VETSGTDQSI AVRADAKTVE DGTNGGSVST  900
NGCVHAPNLN QEIHFPDFPS PTPKSSPEDL EAQAAETIQS LSSCVLVKGP SGVTWSTTTT  960
TTTDAASTTS SVVVTGGQLP QVTQQNAVVL AAPSMKPIDL AADHTTPTQT SDNTQVAHSS  1020
GWPAIVADPD ECDESVSDLL AEVEAMEQNG LPSSPTSTFH CDDDDDLTKG PEKDFFNPVA  1080
RMSLTPETCR MDVSQPSILD DVSTGKSSMG TEAKDNTLFS HCGTAGPELL LFAPPAPASI  1140
SQDLTLTTTA LRLGSETTVE AGSVERLPKS ISGVALEPSP RSSSSHDSAR GNTERSPRGT  1200
GSQQRRSGGH SRDRQWWNNG HNSSFNNSHN NRQWPYSSSH GYDHGSGSYT AHPPKGLKIC  1260
KFYESGYCKK GASCSFWHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A4e-131071761581Histone-lysine N-methyltransferase NSD3
4gnd_C4e-131071761581Histone-lysine N-methyltransferase NSD3
4gne_A4e-131071761581Histone-lysine N-methyltransferase NSD3
4gnf_A4e-131071761581Histone-lysine N-methyltransferase NSD3
4gng_A4e-131071761581Histone-lysine N-methyltransferase NSD3
4gng_D4e-131071761581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g11090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895080.0AC189508.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880063.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLD7LTN20.0D7LTN2_ARALL; Uncharacterized protein
STRINGBostr.6864s0133.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding