PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

MYB

Protein Properties

Length: 256aa MW: 30633.9 Da PI: 6.3857

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g09130	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.4e-18	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W +eEde+lv+ v++lG+++W++ ar g++R++k+c++rw +yl Tp5g09130 11 RGPWLEEEDEQLVKFVTLLGKRRWDSLARVSGLKRSGKSCRLRWMNYL 58 89********************************************97 PP
2	Myb_DNA-binding	51.6	2.2e-16	64	108	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE+ ++ ++++++G++ W+ Iar+++ gRt++++k++w+++ Tp5g09130 64 RGPMSQEEEMIIFQLHALWGNK-WSMIARRLP-GRTDNEVKNYWRTH 108 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.433	6	58	IPR017930	Myb domain
SuperFamily	SSF46689	3.67E-27	9	105	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-14	10	60	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-14	11	58	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-20	12	65	IPR009057	Homeodomain-like
CDD	cd00167	6.82E-9	13	58	No hit	No description
PROSITE profile	PS51294	25.411	59	113	IPR017930	Myb domain
SMART	SM00717	5.7E-16	63	111	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-14	64	108	IPR001005	SANT/Myb domain
CDD	cd00167	2.24E-9	66	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-23	66	112	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDLKKEETLR RGPWLEEEDE QLVKFVTLLG KRRWDSLARV SGLKRSGKSC RLRWMNYLNP 60 SLKRGPMSQE EEMIIFQLHA LWGNKWSMIA RRLPGRTDNE VKNYWRTHFR KKEEAQNYAR 120 YKNNVFSIDN LTDWSGNTGE ELFRKYKETE TTRTRRTQEH GFDEIVKEHN QRSVESDKET 180 IGSIFERESF GVMNSPYENR ISDWISEIST DQSEANHFED NSSCDNENNS KNNLRIGSWW 240 FQESRDFEEF SCSLWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-27	9	112	2	104	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00406	DAP	Transfer from AT3G53200	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g09130

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117256	1e-133	AK117256.1 Arabidopsis thaliana At3g53200 mRNA for putative transcription factor (MYB27), complete cds, clone: RAFL16-81-D10.
GenBank	AY519599	1e-133	AY519599.1 Arabidopsis thaliana MYB transcription factor (At3g53200) mRNA, complete cds.
GenBank	BT005257	1e-133	BT005257.1 Arabidopsis thaliana At3g53200 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293114.1	1e-137	transcription factor MYB27
Swissprot	Q9SCP1	1e-131	MYB27_ARATH; Transcription factor MYB27
TrEMBL	A0A087GXG7	1e-141	A0A087GXG7_ARAAL; Uncharacterized protein
STRING	A0A087GXG7	1e-142	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11397	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	1e-120	myb domain protein 27

Publications ? help Back to Top
Albert NW, et al. A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots. Plant Cell, 2014. 26(3): p. 962-80 [PMID:24642943]