PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g08980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 76aa MW: 8166.92 Da PI: 10.5312 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 131.4 | 2.4e-41 | 8 | 76 | 2 | 70 |
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++a++eakGlnPGlivllv+g +l+vflv+n +lyvyaqknlPP+kkkPvskkklkreklkqGv+vPGe Tp5g08980 8 GKAAAEAKGLNPGLIVLLVIGLPLVVFLVANCVLYVYAQKNLPPKKKKPVSKKKLKREKLKQGVPVPGE 76 57899***************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 7.6E-36 | 12 | 76 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MDGEDFAGKA AAEAKGLNPG LIVLLVIGLP LVVFLVANCV LYVYAQKNLP PKKKKPVSKK 60 KLKREKLKQG VPVPGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g08980 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF370176 | 4e-88 | AF370176.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds. | |||
GenBank | AY059136 | 4e-88 | AY059136.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds. | |||
GenBank | AY088845 | 4e-88 | AY088845.1 Arabidopsis thaliana clone 97045 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013600217.1 | 8e-25 | PREDICTED: DNA-binding protein S1FA1 | ||||
Refseq | XP_013730236.1 | 8e-25 | DNA-binding protein S1FA1 | ||||
Swissprot | Q42337 | 7e-20 | S1FA2_ARATH; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A078J2Z0 | 2e-23 | A0A078J2Z0_BRANA; BnaCnng30990D protein | ||||
TrEMBL | A0A3P6GBG2 | 2e-23 | A0A3P6GBG2_BRAOL; Uncharacterized protein | ||||
STRING | XP_006403699.1 | 1e-23 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2823 | 27 | 69 |