PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g08590
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 378aa    MW: 42797 Da    PI: 9.9233
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g08590genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-08296345147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ + ++     ++Rt  ++k++w ++
        Tp5g08590 296 RRPFTVSEVEALVQAVERLGTGRWRDVKSHAFdhaNHRTYVDLKDKWKTL 345
                      679***************************999**9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.556291350IPR017930Myb domain
SMARTSM007171.8E-8295348IPR001005SANT/Myb domain
PfamPF002493.0E-6296345IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-11296346IPR009057Homeodomain-like
CDDcd116604.25E-17297347No hitNo description
SuperFamilySSF466893.89E-16297377IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MLDCGFDVYQ IPAVPRAYRS PRGRRQKLMN KHRSEFEVLA QVAGKFSCDR KDYEIKETKD  60
DFVVNNFLET MEVEVKPQPC PEKPSQVLLS KDWLALGPSI SSSPITQEEN SNNDGKRKMS  120
STKERGCSSQ ESENMYPLKK RKLFYQNDEP DQSRDAPCTL KFGIKSLKIS ELLVDIPESA  180
TVGSLKVAVM KAVTQILKDG LNIGVLLRGK TIVDDSKTLL QIGIPRGDDD NNHNLGFTLE  240
PRISETITTL PTVSPKTRHR APDRSVESTK TMVAKSVVPV RTKLASQPEM VHRRIRRPFT  300
VSEVEALVQA VERLGTGRWR DVKSHAFDHA NHRTYVDLKD KWKTLVHTAK ISARQRRGEP  360
VPQELLDRVL AAHAFWSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-47279378199Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 4 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g08590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329604e-49AL132960.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F5K20.
GenBankCP0026864e-49CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013768.10.0telomere repeat-binding protein 6
SwissprotQ9M3470.0TRP6_ARATH; Telomere repeat-binding protein 6
TrEMBLD7LUM40.0D7LUM4_ARALL; Predicted protein
STRINGAl_scaffold_0005_22800.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15921911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53790.11e-173TRF-like 4