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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Tp5g07990 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
SRS |
| Protein Properties |
Length: 251aa MW: 27289.8 Da PI: 10.3375 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp5g07990 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 170.2 | 1.1e-52 | 95 | 241 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103
++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstWvp++ +++++ ++ ++s++++++k+ + + k ++ +s + +s+++s++e++++
Tp5g07990 95 EEKVCRDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSSSSSHHRSTSR-----TSSSSSDRKKKLKIS-DKPTNPASVSFVSTTTSRQETSFK 188
6789***************************************998886433322.....222233333333332.333333444555666666666666 PP
DUF702 104 s.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
+ lP +++++avf+++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++
Tp5g07990 189 EgLPGKIEAPAVFKRTRVTAISNnEQAEIGYQATVTISGHVFKGFLHYHGVDH 241
66*******************9868899***********************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 251 aa
Download sequence Send
to blast |
MAKKPIYAVA NPPSLLSWPP QQQPSSSSTP FSVAANIPDH SSVSAAGIST PDYMLGLRNI 60
ILLPPPAPQI TQLSPSPVNF AAVEGNNRSR NNNVEEKVCR DCGNRAKKEC LFERCRTCCK 120
SRGYNCATHV KSTWVPSSSS SSHHRSTSRT SSSSSDRKKK LKISDKPTNP ASVSFVSTTT 180
SRQETSFKEG LPGKIEAPAV FKRTRVTAIS NNEQAEIGYQ ATVTISGHVF KGFLHYHGVD 240
HNKAFPCLSK K
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF446889 | 2e-74 | AF446889.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds. |
| GenBank | AY052675 | 2e-74 | AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds. |
