PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g06740
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 395aa    MW: 42970.1 Da    PI: 5.3069
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g06740genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-1861106147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W+teEd  l ++v +lG+++W++Iar ++ gR++k+c++rw + 
        Tp5g06740  61 KGPWSTEEDAVLTKLVSKLGPRNWSLIARGIP-GRSGKSCRLRWCNQ 106
                      79******************************.***********985 PP
2Myb_DNA-binding52.31.3e-16113157147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r++++ eEd  ++ a++ +G++ W+ Ia++++ gRt++ +k++w++ 
        Tp5g06740 113 RKPFSDEEDRMIISAHAVHGNK-WAVIAKMLP-GRTDNAIKNHWNST 157
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.47756111IPR017930Myb domain
SuperFamilySSF466896.83E-3158154IPR009057Homeodomain-like
SMARTSM007174.6E-1560109IPR001005SANT/Myb domain
PfamPF002497.5E-1761106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2562114IPR009057Homeodomain-like
CDDcd001674.51E-1463105No hitNo description
SMARTSM007178.9E-17112160IPR001005SANT/Myb domain
PROSITE profilePS5129421.701112162IPR017930Myb domain
PfamPF002494.6E-15113157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-23115161IPR009057Homeodomain-like
CDDcd001679.79E-13115158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEGETHRSEP LPFQSTDSDE VISAAIETEL AELAASNSNG GGCGVGVGGG GGGGGIKSKV  60
KGPWSTEEDA VLTKLVSKLG PRNWSLIARG IPGRSGKSCR LRWCNQLDPC LKRKPFSDEE  120
DRMIISAHAV HGNKWAVIAK MLPGRTDNAI KNHWNSTLRR KYADLWNNGQ WMASQVTTAY  180
IKNENVDGTS NTSIQQQLPP TEIISPPEPL QVNDVTMDDA ANEPQEQAPI ESSTPVDSNV  240
FRPVARVGAF SVYNPTSQRN GYRDHNVVPC EGPLIQAAKP DSLAGKFLQS LCGEPNIPSK  300
CGHGCSTYPA ETKLSGKSLL GPEFVDYEEP CAVFSQELIS IATDLNNIAW IKSGLDNTIV  360
REAEQSSNID NFKFDDPRMK FSGMMPRQDF FCARS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-40601613104C-Myb DNA-Binding Domain
1msf_C2e-40601613104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g06740
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526600.0AK352660.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403424.10.0transcription factor MYB25
SwissprotO041921e-119MYB25_ARATH; Transcription factor MYB25
TrEMBLA0A087GY620.0A0A087GY62_ARAAL; Uncharacterized protein
STRINGA0A087GY620.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.10.0myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]