PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp5g05800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 222aa MW: 25153.6 Da PI: 6.146 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.3 | 4.8e-12 | 48 | 95 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+h+e+ErrRR+riNs +++Lr+ll + K +Ka+ L k+v+ +k+Lq Tp5g05800 48 RNHKEAERRRRERINSHLNKLRDLLSCN-----SKTDKATLLAKVVQRVKELQ 95 58***********************997.....7*****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.875 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 48 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-12 | 48 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-13 | 48 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-10 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 1.6E-5 | 130 | 207 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 4.1E-5 | 131 | 207 | No hit | No description |
CDD | cd04873 | 5.24E-4 | 132 | 198 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence Send to blast |
MQPEISDQIF YSILTGGFCA SSTTTASSFY PFAIEDTISK DKALATLRNH KEAERRRRER 60 INSHLNKLRD LLSCNSKTDK ATLLAKVVQR VKELQRQTLE ISNETLPSET DEISVVNFED 120 CSNDDGRIIF KISFCCEDRP DLLQDLLEIL KSLKMETLYA DMTTIGGRTR NDLVVVADKE 180 QHSVESVKFL QNALKSLLER SSQSVMMGRG GGGDRRLEHY II |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 53 | 58 | ERRRRE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp5g05800 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402950.1 | 1e-116 | putative transcription factor bHLH107 | ||||
Swissprot | Q9LET0 | 1e-109 | BH107_ARATH; Putative transcription factor bHLH107 | ||||
TrEMBL | V4LWX3 | 1e-114 | V4LWX3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006402950.1 | 1e-115 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3642 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56770.1 | 1e-110 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|