PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g04890
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 414aa    MW: 45092.6 Da    PI: 6.846
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g04890genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.1e-07216242430
                HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
        HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                +h+ +Er RR++iN ++  L+el+P +
  Tp5g04890 216 SHSLAERARREKINARMKLLQELVPGC 242
                8************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.47E-5210246No hitNo description
SuperFamilySSF474591.14E-11210242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.198212294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-5216242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-11216242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-4218300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-11275313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-11276312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDLNGGFGAR SGGGGPCREA PGLESLHLGG DEFRPLATLP PENAGGFTAL LELPPTQAVE  60
LLHFTDSSSS SQAVAVTGIG VDIAPPPLHS FGSLTFPSNS VLMERAARFS VIATEQQQNG  120
NVSGETTTSS VPSNSSANLD RVKTEPAETD SSQRLISDQA AVENQSPCPS QNNRSGKRKD  180
FEKKVKGSTK KNKSSEENEK LPYVHVRARR GQATDSHSLA ERARREKINA RMKLLQELVP  240
GCDKGTYFGG KIKIKVCFGV HLLMISGKKV ASFLWKIQGT ALVLDEIINH VQSLQRQVEM  300
LSMRLAAVNP RIDFNLDTIL ASENGSLMDG SFNGTAMQLA WPHQVIDTEQ SYHHRQLQPP  360
PPPQQWPFDG LNQSAWGREE DQYHGNDHNS LMAVSENLMV GSANLHPNQV KMEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g04890
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527280.0AK352728.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881292.10.0LOW QUALITY PROTEIN: transcription factor bHLH60
SwissprotQ3EAI10.0BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A178VB920.0A0A178VB92_ARATH; Uncharacterized protein
STRINGAT3G57800.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]