 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Tp5g04220 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
Trihelix |
| Protein Properties |
Length: 320aa MW: 35871.4 Da PI: 9.9511 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp5g04220 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 40.8 | 5.9e-13 | 26 | 126 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdql 85
+W+++ + +Li+a + +l+rg+l++++W+ev++++ ++ + r+ +qCk++++ l+k+yk +k++ ++ + +s +p+f+ l
Tp5g04220 26 CWSEEATFTLIQAWGCRYVDLSRGNLRQKHWQEVANAVndrhfntgrnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSESipGAAYVSPWPFFSAL 125
7************************************************997777789*******************9998887333666789****999 PP
trihelix 86 e 86
+
Tp5g04220 126 D 126
7 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MKDAVNDSFS PGSSRPSPST LSREDCWSEE ATFTLIQAWG CRYVDLSRGN LRQKHWQEVA 60
NAVNDRHFNT GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VEKARVSESI PGAAYVSPWP 120
FFSALDDLLR ESFPTSTTPD STDNQRPSLP MSIIPVPVAP RSAIPRRPAP APAIMPLGGD 180
NLLGFRGNLN AFAAAAAAAA SPAYEDDSEG SRSRSSGRSG GNKKRQREIE QKQGYKEVAE 240
AIERLGQIYE RVEERKRKEM VELEKQRMRF AKELECHRMQ LFTEMQVRLH KLRRTSGSKG 300
PTSSASAALE YGMMDFPSYF
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353244 | 0.0 | AK353244.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-O01. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G58630.1 | 1e-141 | sequence-specific DNA binding transcription factors |
