PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g04060
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28268.8 Da    PI: 9.3905
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g04060genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.1e-312473150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+
  Tp5g04060 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 73
               79***********************************************8 PP
2K-box114.31.2e-3795187799
      K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 s++ea+++++qqe++kL+++i+ +q+++R+++Ge+L+sL++keL++Le +Lek+++++RskKnell+++ie++qk+e elq++n++Lr+k++
  Tp5g04060  95 PSVTEANTQYYQQEASKLRRQIRDIQNSNRNIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHDNMYLRAKIA 187
                45899**************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.1E-401675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.3891676IPR002100Transcription factor, MADS-box
CDDcd002654.63E-441790No hitNo description
SuperFamilySSF554551.14E-321788IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-321838IPR002100Transcription factor, MADS-box
PfamPF003193.3E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-323853IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-325374IPR002100Transcription factor, MADS-box
PfamPF014862.1E-27100186IPR002487Transcription factor, K-box
PROSITE profilePS5129715.172102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEEGGSSHDA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
VIFSTRGRLY EYANNSVKGT IERYKKACSD AVNPPSVTEA NTQYYQQEAS KLRRQIRDIQ  120
NSNRNIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKNEL LVAEIEYMQK REMELQHDNM  180
YLRAKIAQGA RLNPEHQESS VIQGTAVYES GLSSNDQSQH YNRNYIPVNL LEPNQQFSGQ  240
DQPPLQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-201684169Myocyte-specific enhancer factor 2B
1tqe_Q3e-201684169Myocyte-specific enhancer factor 2B
1tqe_R3e-201684169Myocyte-specific enhancer factor 2B
1tqe_S3e-201684169Myocyte-specific enhancer factor 2B
6c9l_A3e-201684169Myocyte-specific enhancer factor 2B
6c9l_B3e-201684169Myocyte-specific enhancer factor 2B
6c9l_C3e-201684169Myocyte-specific enhancer factor 2B
6c9l_D3e-201684169Myocyte-specific enhancer factor 2B
6c9l_E3e-201684169Myocyte-specific enhancer factor 2B
6c9l_F3e-201684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00093SELEXTransfer from AT3G58780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g04060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHAGL1A0.0M55550.1 Arabidopsis thaliana transcription factor (AGL1), complete cds.
GenBankAY0861960.0AY086196.1 Arabidopsis thaliana clone 22339 mRNA, complete sequence.
GenBankDQ6531590.0DQ653159.1 Arabidopsis thaliana clone 0000017184_0000012028 unknown mRNA.
GenBankJQ9730910.0JQ973091.1 Arabidopsis thaliana Shatterproof (SHP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001325710.11e-177K-box region and MADS-box transcription factor family protein
SwissprotP293811e-178AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBLA0A1I9LM271e-175A0A1I9LM27_ARATH; K-box region and MADS-box transcription factor family protein
STRINGfgenesh2_kg.5__2325__AT3G58780.11e-174(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33412350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-168MIKC_MADS family protein
Publications ? help Back to Top
  1. Matalon O, et al.
    Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity.
    Sci Signal, 2016. 9(429): p. ra54
    [PMID:27221712]
  2. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]