PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g03100
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 642aa    MW: 71629.3 Da    PI: 10.1225
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g03100genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-144898248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                     + W t+E++ll +avk++G+++W+++a+++g    ++ ++ +c++++q+++
        Tp5g03100 48 QVWGTWEELLLTCAVKRHGSRDWDSVAKEVGsrtsLNASAPNCRLKYQDLK 98
                     68**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.55E-643100IPR009057Homeodomain-like
SMARTSM007172.6E-746100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-44782IPR009057Homeodomain-like
PfamPF002491.3E-124898IPR001005SANT/Myb domain
PROSITE profilePS500906.1565098IPR017877Myb-like domain
CDDcd001673.25E-75098No hitNo description
SuperFamilySSF473702.62E-15292406IPR001487Bromodomain
SMARTSM002971.8E-18298407IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.3E-16298431IPR001487Bromodomain
CDDcd043693.43E-14305402No hitNo description
PfamPF004398.4E-10311392IPR001487Bromodomain
PROSITE profilePS5001411.781317388IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MMREEDVVTS NGMNDERTTN IYSCSGSDNN RIRDGNGDGD RNLNQISQVW GTWEELLLTC  60
AVKRHGSRDW DSVAKEVGSR TSLNASAPNC RLKYQDLKHR FQDSVDDDGH GNSEAVAEEE  120
RDSEIPWLEQ LRSLRVAELR REVQRCDDSI LSLQLKVKKL EEEKDGNDGD NKPDLEDDSK  180
GVRSLNDETE PTRLNRETTE SDHRSMNESN STASVDKNAD HEQLCGDKMV HTNKNSRNTD  240
PDPARKAAAE EEEEGTVSRR SGMSNSGELG ESGTSTGHRK RRVHKYKSGE DSSIRGGDNK  300
SAGNKSQPLI EIIKLIRSHP HGSVFESRLR SQETKVYKRL IRQHLDIKTI DKKIEKGSYV  360
SSILLFYRDL KLLFTNAIVF FPTSSSESVA AQELRTLVSN EMKKQTGKSS HLAIKAEAES  420
SVSKQNSSVP PLVVCKKKSS ASKKTFPSSS LKQKDEKKSQ EVSEEKTVTT TTAARSSRRK  480
SKGIDVVAKN TKIGGAKNNN SKKQTDSKTD SSNDDDDDDA KEETPKSGKK AVVIASEKKK  540
SVAEFLKRIK KNSPQKGKET TSKEQKKSDG NVKKENSKVK PRELRSNSTG KKKIEVENNS  600
NKSSSKRKQS KKEAEEVTAA ATVKRGRASG KDNQQPRKRS RR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g03100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012776.10.0uncharacterized protein LOC18020113
TrEMBLV4NDJ90.0V4NDJ9_EUTSA; Uncharacterized protein
STRINGXP_006402623.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.10.0DNA-binding bromodomain-containing protein