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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Tp5g02970 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 341aa MW: 38058.1 Da PI: 9.7456 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp5g02970 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 404.2 | 1.6e-123 | 1 | 341 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla..... 92
mdd g+r+ r+k+ + ++++s+k q+ms+iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erd++l+al+++en +a
Tp5g02970 1 MDDGGHRDngRQKApQGQHQPSMK-----QVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENPMAtataa 95
9*****998999995555558898.....***************************************************************99999999 PP
GAGA_bind 93 ....salpvgvqvlsgtksidslqqlse.......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkke 181
++p+g+q+++g+k++++ +++++ pql+++a+e+re+e ++ lp++ + a e++k+k+++r k+pk++++++++k+++k+++kvkke
Tp5g02970 96 vanmATCPPGCQMSRGVKHMHNPHMHHHhqhqhhmPQLSENAYETREMEPNDGLPTSPPTGFALESAKPKRGKRVKDPKATTKTAANKRGPKNQRKVKKE 195
999999***************99996666899999***************************************************************** PP
GAGA_bind 182 sader........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRia 256
s+d+ sk+++k++d+ +ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+ +++r+aR++
Tp5g02970 196 SEDDLtkimfvkttldygeeetskhvllgSKSDWKNQDMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVG 295
*984358********************************88*********************************************************** PP
GAGA_bind 257 grKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
Tp5g02970 296 GRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 341
********************88***********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MDDGGHRDNG RQKAPQGQHQ PSMKQVMSII AERDAAIQER NLAISEKKAA VAERDMAFLQ 60
RDTAIAERNN AIMERDSALT ALQYRENPMA TATAAVANMA TCPPGCQMSR GVKHMHNPHM 120
HHHHQHQHHM PQLSENAYET REMEPNDGLP TSPPTGFALE SAKPKRGKRV KDPKATTKTA 180
ANKRGPKNQR KVKKESEDDL TKIMFVKTTL DYGEEETSKH VLLGSKSDWK NQDMVGLNQV 240
VYDETTMPPP VCSCTGVLRQ CYKWGNGGWQ SSCCTTTLSM YPLPALPNKR HARVGGRKMS 300
GSAFNKLLSR LAAEGHHDLS NPVDLKDHWA KHGTNRYITI K
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB016888 | 0.0 | AB016888.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDH9. |
| GenBank | AK221752 | 0.0 | AK221752.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-54-A10. |
| GenBank | AK227246 | 0.0 | AK227246.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL11-01-O04. |
| GenBank | BT024874 | 0.0 | BT024874.1 Arabidopsis thaliana At5g42520 mRNA, complete cds. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| GenBank | EF123107 | 0.0 | EF123107.1 Arabidopsis thaliana GAGA-binding transcriptional activator (BBR/BPC6) gene, complete cds. |
| GenBank | EF123108 | 0.0 | EF123108.1 Arabidopsis thaliana GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
