PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HD-ZIP

Protein Properties

Length: 316aa MW: 34670 Da PI: 8.4894

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g02830	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1.1e-18	159	213	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LAk+l+L +rqV vWFqNrRa+ k Tp5g02830 159 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTK 213 788899***********************************************98 PP
2	HD-ZIP_I/II	122.8	1.6e-39	159	248	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l Tp5g02830 159 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVSELR-AL 248 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	4.6E-35	1	115	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	3.1E-19	138	213	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.42E-19	142	216	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.313	155	215	IPR001356	Homeobox domain
SMART	SM00389	2.6E-15	157	219	IPR001356	Homeobox domain
CDD	cd00086	4.00E-14	159	216	No hit	No description
Pfam	PF00046	4.1E-16	159	213	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	190	213	IPR017970	Homeobox, conserved site
Pfam	PF02183	5.7E-11	215	249	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.6E-26	215	258	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MGERDDGLGL SLSLSLGLNQ KESSSRLNPI PLASYSSSSH MHMQSHYSHP PKIQNNWIQM 60 FQSSERNSDV RSFLRGIDVN RDPSRVVVDV EDDAGVSSPN STVSSVMSGK RSERELMAAA 120 TAGGGRVVED NEAERASSSL GGGGSDDEDG GGNGDDGSRK KLRLSKEQAL VLEETFKEHS 180 TLNPKQKMAL AKQLNLRTRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCEN LTEENRRLQK 240 EVSELRALKL SPHLYMHMKP PTTLTMCPSC ERVAVTSASS SSMVAPPVMA SSSSPMGPMS 300 PWAAIPLRQR PAAGSH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	163	SRKKLRL
2	207	215	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g02830

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ440781	0.0	AJ440781.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT3 (hat3 gene).
GenBank	AY099565	0.0	AY099565.1 Arabidopsis thaliana homeobox-leucine zipper protein HAT3 (At3g60390) mRNA, complete cds.
GenBank	BT008713	0.0	BT008713.1 Arabidopsis thaliana At3g60390 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020882296.1	1e-180	homeobox-leucine zipper protein HAT3
Swissprot	P46602	1e-177	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	D7LRP7	1e-177	D7LRP7_ARALL; Uncharacterized protein
STRING	Bostr.13158s0030.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2577	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	1e-127	homeobox-leucine zipper protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]