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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Tp5g00890 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
MYB |
| Protein Properties |
Length: 333aa MW: 37127.2 Da PI: 5.1785 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp5g00890 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+grWT+eEd++l d+++ G g+W++ ++ g++R++k+c++rw +yl
Tp5g00890 14 KGRWTAEEDQILTDYIQSNGEGSWRALPKNAGLKRCGKSCRLRWINYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 50.8 | 3.8e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+ T eE++l+v+++ lG++ W+ Ia+ ++ gRt++++k++w+++l
Tp5g00890 67 RGNITREEEDLIVKLHSSLGNR-WSMIASNLP-GRTDNEIKNYWNSHL 112
7999******************.*********.************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MGRAPCCEKV GMKKGRWTAE EDQILTDYIQ SNGEGSWRAL PKNAGLKRCG KSCRLRWINY 60
LRSDLKRGNI TREEEDLIVK LHSSLGNRWS MIASNLPGRT DNEIKNYWNS HLSRKLHSFI 120
RKSTVIDNAH PPQKHRPGRT RRSAMKPKFR LNPKNNKNPN SLKANESYAV LAMATKENGE 180
GGEEEDALNV LSSSSSSGAE KAGLGPCGCG NDGYCNPSIN DDDGVLCFND DIFDTCFLSN 240
EPNADHVFPS GPNKGFSSGH ENIDTMADDF VDWDFVCRDG QSLCDEKEGT DSVLSWLLDA 300
DKLESDIRQT ESNDFGEPLD LDEEKAMVAW LLS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Modulates overall growth by reducing the proliferation activity of meristematic cells and delaying development (PubMed:18359753). Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1 (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:18359753, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Huang BH, et al.
Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
Int J Mol Sci, 2015. 16(3): p. 5900-21
[PMID:25782156] - Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
Plant Physiol. Biochem., 2016. 102: p. 70-9
[PMID:26913794] - Mondal SK,Roy S
Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
[PMID:28490275] - Camargo-Ramírez R,Val-Torregrosa B,San Segundo B
MiR858-Mediated Regulation of Flavonoid-Specific MYB Transcription Factor Genes Controls Resistance to Pathogen Infection in Arabidopsis.
Plant Cell Physiol., 2018. 59(1): p. 190-204
[PMID:29149328]
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