PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9910
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 870aa    MW: 97434.9 Da    PI: 6.2591
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9910genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.23.7e-24126227199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g+ W++k+i+r++++r++lt+GW+ Fv+a++L +gD
  Tp57577_TGAC_v2_mRNA9910 126 FCKILTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGD 208
                               99*****************************8544444..48******************************************* PP

                               EEEEEE-SSSEE..EEEEE-S CS
                        B3  79 fvvFkldgrsefelvvkvfrk 99 
                               +v+F   ++++ +l+++++r+
  Tp57577_TGAC_v2_mRNA9910 209 SVLFI--WNEKNQLLLGIRRA 227
                               *****..8899999****997 PP
2Auxin_resp120.11.7e-39252335183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  Tp57577_TGAC_v2_mRNA9910 252 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 335
                               79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-47111255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-21125226No hitNo description
PfamPF023621.1E-22126227IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084126228IPR003340B3 DNA binding domain
SMARTSM010194.3E-24126228IPR003340B3 DNA binding domain
PfamPF065071.2E-34252335IPR010525Auxin response factor
SuperFamilySSF542771.5E-6733812No hitNo description
PROSITE profilePS5174522.627737821IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MKLSSAGFSP PPEEGEKRVL DSELWHACAG PLVSLPADGS RVVYFPQGHS EQVAVSTNRE  60
VDTYIPNPSL PPQLICQLHN LTMHADTETD EVYAQMTLQP LNPEEQKEAY HPAELGTANK  120
QPTNYFCKIL TASDTSTHGG FSVPRRAAEK VFPPLDFSQQ PPAQELIARD LHGNDWKFKH  180
IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL LLGIRRANRP QHMMPSSVLS  240
SDSMHLGLLA AAAHAAATNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR VSVGMRFRML  300
FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT  360
FPMYPSPFPL RLKRPWPPGL PAFHGLKDDD FGMNSPLLWL RDADRGLQTL NFQGMGVNPW  420
MQARLDPSMM NMQPDMYQAM AAAALQDMRT LDPSKQHPAS LLQFQQPQNF PNGNAALMQN  480
QMLQQSQPQQ AFSKNQESQL PSQSQGQTQN FQQLLQNQHS FTNQSYHHLQ QQQQLQQQQQ  540
QQQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ QVVDRQQISN AVSTMSQFVS APQSQSTQPM  600
QAISSIGNQQ HFSDSNGNPA TTAILGQLQT TISQNAITLP PFPGRECTIE GNTDPQNHLL  660
FGFNIEPSSH LVYNEMSNLK RVNSNCDSSA VPFQSSTYLN TTTGADSSLN PGMTHSIGES  720
GFLQTPENGG QGNPPNKTFV KVYKSGSFGR SLDITKFSNY PELRSELARM FGLEGELEDP  780
VRSGWQLVFV DQENDVLLLG DGPWPEFVNS VWCIKILSPQ EVQQMGNNGL ELLNSAPTQR  840
LSNGICDDYT GREDSNLSTG LTTVGSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1571635647388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9910
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504543.10.0auxin response factor 6 isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1S2YGP30.0A0A1S2YGP3_CICAR; Auxin response factor
STRINGXP_004504542.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]