PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9882
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TCP
Protein Properties Length: 499aa    MW: 55507.7 Da    PI: 7.4882
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9882genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.64.4e-38472032136
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasece 74 
                                g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL++ a  ai el+++            +        
  Tp57577_TGAC_v2_mRNA9882  47 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDAISELPSLnnslftdinnnnN-------- 123
                               689*************************************************************6666654433321........ PP

                       TCP  75 aesssssas....nsssg.................kaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134
                                   + s++        +                  + +++ +s+ s++s+ s l+l++     sr kar+rarert++++ ++n
  Tp57577_TGAC_v2_mRNA9882 124 ----QLSEQgvdsV---HdaemvvengennyhgqnLSLSKSGCSSTSETSKGSGLSLSRsdvrVSRVKARERARERTAKDKEKEN 201
                               ....2222211120...1222333444445556764445555666666777667777665556899***********99998887 PP

                       TCP 135 kl 136
                               + 
  Tp57577_TGAC_v2_mRNA9882 202 HH 203
                               65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-4248199IPR005333Transcription factor, TCP
PROSITE profilePS5136931.02849107IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.966179199IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MEEDEIQAQH KFPRVGNEDD NNGRRGDVNR FNSWHHSSRI IRVSRASGGK DRHSKVMTSK  60
GLRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKSA SDAISELPSL NNSLFTDINN  120
NNNQLSEQGV DSVHDAEMVV ENGENNYHGQ NLSLSKSGCS STSETSKGSG LSLSRSDVRV  180
SRVKARERAR ERTAKDKEKE NHHDNVNPHH HHQHHNVHSS ISQTASFTEL LTGGINNAVP  240
TTNSPRGSVD EPSFFNKARQ QQQQQQQQQQ WSSSAPMDHY FSPMFLGSSS SRTHHHHHHH  300
QLGHSLHDHQ SMTMSSPFNS GENHSADQNQ NQHQHHLQHQ FSLLPDHMMQ NVVTSSSTQP  360
SGGDNDYNLN FTISSGLAGY NRGTLQSNSP SLLSHLQRFS VSSLDGSNNL PFFMGGGGGA  420
ASASPASASP APTAMEIIII TITITIISTR FNTISFHLYL MVAACSSIQI RKGNPKTEDF  480
HFSSIFFLQG RDFNKMEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2354108155Putative transcription factor PCF6
5zkt_B1e-2354108155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9882
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0085337e-73KF008533.1 Vicia sativa subsp. sativa microsatellite VSspS-245 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341024.11e-146transcription factor TCP2-like
RefseqXP_027341025.11e-146transcription factor TCP2-like
RefseqXP_027341026.11e-146transcription factor TCP2-like
RefseqXP_027341027.11e-146transcription factor TCP2-like
RefseqXP_027341028.11e-146transcription factor TCP2-like
RefseqXP_027341029.11e-146transcription factor TCP2-like
RefseqXP_027341030.11e-146transcription factor TCP2-like
RefseqXP_027341031.11e-146transcription factor TCP2-like
RefseqXP_027341032.11e-146transcription factor TCP2-like
RefseqXP_027341033.11e-146transcription factor TCP2-like
RefseqXP_027341034.11e-146transcription factor TCP2-like
RefseqXP_027341035.11e-146transcription factor TCP2-like
RefseqXP_027341036.11e-146transcription factor TCP2-like
RefseqXP_027341037.11e-146transcription factor TCP2-like
RefseqXP_027341038.11e-146transcription factor TCP2-like
TrEMBLA0A2K3MR870.0A0A2K3MR87_TRIPR; Transcription factor TCP2-like protein
STRINGXP_004504554.11e-138(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-46TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2