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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA9869 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | B3 | ||||||||
Protein Properties | Length: 234aa MW: 26655.9 Da PI: 10.2376 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.5 | 2.1e-12 | 136 | 223 | 2 | 90 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld 85 + +l ++++ +++l l k+fae + g k +k + ++ ++ + kl + ++++g++ +++GWk+F+ a g k+gD+++F+ + Tp57577_TGAC_v2_mRNA9869 136 VVTL-TKYTALKSQLPLKKEFAEFMRGCK-HHKSIYFMGRTANFVPCKLLIgEGYKGSVKFGAGWKRFCAASGYKAGDVLTFECK 218 4455.555666667********8884443.5568***************7779******************************77 PP SSSEE CS B3 86 grsef 90 + ++ Tp57577_TGAC_v2_mRNA9869 219 DAKGS 223 65554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.1E-4 | 24 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-12 | 127 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-11 | 130 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.783 | 134 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-8 | 136 | 224 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MCPGRRFFGN VWNSSMFKDV KGGFATVTMN FMERYAEVDP KFVEEFKEEL GGIWRLKDEC 60 GNRHIVKFNN SVTTPDIFEG MTELRQFYGL TGSHLLLFGY KGNNKFRLTV FKKEVDEFSF 120 PAFHSQSNKP KSKKFVVTLT KYTALKSQLP LKKEFAEFMR GCKHHKSIYF MGRTANFVPC 180 KLLIGEGYKG SVKFGAGWKR FCAASGYKAG DVLTFECKDA KGSRIMFVTK TSN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA9869 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2Z6NF92 | 1e-125 | A0A2Z6NF92_TRISU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31615.1 | 3e-06 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA9869 |