PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9763
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 316aa    MW: 35655.1 Da    PI: 7.9366
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9763genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.6e-161461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WTt Ed++l +++k++G g W+  +++ g++R++k+c++rw++yl
  Tp57577_TGAC_v2_mRNA9763 14 RGAWTTHEDKILTEYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                              89********************************************97 PP
2Myb_DNA-binding51.52.3e-1667111147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Tp57577_TGAC_v2_mRNA9763  67 RGNISSDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                               78999*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.09961IPR017930Myb domain
SuperFamilySSF466891.11E-2712108IPR009057Homeodomain-like
SMARTSM007173.4E-131363IPR001005SANT/Myb domain
PfamPF002493.1E-141461IPR001005SANT/Myb domain
CDDcd001677.06E-101661No hitNo description
PROSITE profilePS5129424.56862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.8E-2465116IPR009057Homeodomain-like
SMARTSM007173.4E-1566114IPR001005SANT/Myb domain
PfamPF002492.6E-1467112IPR001005SANT/Myb domain
CDDcd001673.33E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRSPCCAKE GLNRGAWTTH EDKILTEYIK LHGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SSDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKVKDLN  120
QQNTNNSSPT KPSTQPKNAK IKQKQINPKP MKPNSNVVRT KATKCSKVLF INSPPNSSSP  180
MHNLQNKAEA ETTTKPSMLV DGVASDSMSN NEMERGDGFL SFRDEEKELS ADLLDDFNIA  240
NDICLSELLN SDFSNACNFD YNDLLSPCSD QTQMFSDDEI LKNWTQCNFA YETNVSNNLH  300
SFASFLESSE EVLGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9763
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1201770.0JN120177.1 Medicago sativa tannin-related R2R3 MYB transcription factor (Myb14) gene, Myb14-2 allele, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458423.10.0transcription factor MYB8
TrEMBLA0A2K3PI400.0A0A2K3PI40_TRIPR; Tannin-related R2R3 MYB transcription factor
STRINGXP_004507986.11e-148(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.14e-67MYB family protein