PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

AP2

Protein Properties

Length: 471aa MW: 53238.5 Da PI: 8.7013

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA9640	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39	2e-12	185	241	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g Tp57577_TGAC_v2_mRNA9640 185 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqARKGKQ-GGYDMEEKAARAYDMAALKYWG 241 78*****************87777666558877.66****************98 PP
2	AP2	43.1	1e-13	286	335	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeA +a++ a+ k++g Tp57577_TGAC_v2_mRNA9640 286 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAGEAYDIAAIKFRG 335 9*************988532...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.83E-14	185	251	IPR016177	DNA-binding domain
CDD	cd00018	3.70E-19	185	249	No hit	No description
Pfam	PF00847	4.0E-9	185	241	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.372	186	249	IPR001471	AP2/ERF domain
SMART	SM00380	2.3E-22	186	255	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.7E-13	186	250	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-6	187	198	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-16	284	344	IPR016177	DNA-binding domain
CDD	cd00018	1.12E-23	284	345	No hit	No description
SMART	SM00380	3.5E-30	285	349	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.452	285	343	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.8E-17	285	343	IPR001471	AP2/ERF domain
Pfam	PF00847	3.3E-8	286	335	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-6	325	345	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MKSFENIYDT INLKNQNSNM LGFSVSPQMN ISVPSFAAAA TETVPTSFYY HPTPLHNYGF 60 YYGLEGEHVG LYSPLPINML DGSTYGIEAL SRSQSQEGSM KNQLKDSVQL PNIVEDEVSG 120 LKRWVSRDIH ATNHAQESKY GFTMSPTSQS SCVTSSQQTS LIDSVSTDTM KRKKNQNQTF 180 GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQARKGKQG GYDMEEKAAR AYDMAALKYW 240 GPSTRINFPL ENYQKELEEM KKMTRQEYVA HLRRKSSGFS RGASMYRGVT RHHQHGRWQA 300 RIGRVAGNKD LYLGTFTTQE EAGEAYDIAA IKFRGANAVT NFDITKYDVE KIIASNNLLN 360 SEEAKRNRKM DDLINIEEAI NPMQKRCKIQ SFSIGLEEIY NQEVEEYSNR VLHVSNPSSI 420 VTSLCSSREQ SPENRTSLPM LFGMTSTESI SSFSLPQMPL SVFAAWNDAA *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MKSFENIYDT INLKNQNSNM LGFSVSPQMN ISVPSFAAAA TETVPTSFYY HPTPLHNYGF  60
YYGLEGEHVG LYSPLPINML DGSTYGIEAL SRSQSQEGSM KNQLKDSVQL PNIVEDEVSG  120
LKRWVSRDIH ATNHAQESKY GFTMSPTSQS SCVTSSQQTS LIDSVSTDTM KRKKNQNQTF  180
GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQARKGKQG GYDMEEKAAR AYDMAALKYW  240
GPSTRINFPL ENYQKELEEM KKMTRQEYVA HLRRKSSGFS RGASMYRGVT RHHQHGRWQA  300
RIGRVAGNKD LYLGTFTTQE EAGEAYDIAA IKFRGANAVT NFDITKYDVE KIIASNNLLN  360
SEEAKRNRKM DDLINIEEAI NPMQKRCKIQ SFSIGLEEIY NQEVEEYSNR VLHVSNPSSI  420
VTSLCSSREQ SPENRTSLPM LFGMTSTESI SSFSLPQMPL SVFAAWNDAA *

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269\|PubMed:21481033}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA9640

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin. {ECO:0000269\|PubMed:21481033}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004511807.1	0.0	AP2-like ethylene-responsive transcription factor ANT isoform X2
Swissprot	Q84Z02	1e-125	CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBL	A0A1S2YY63	0.0	A0A1S2YY63_CICAR; AP2-like ethylene-responsive transcription factor ANT isoform X2
STRING	XP_004511806.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF916	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-118	AP2 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA9640

Publications ? help Back to Top
Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Li P,Xue H Structural characterization and expression pattern analysis of the rice PLT gene family. Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97 [PMID:21807632]