PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA9232

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 188aa MW: 21893.8 Da PI: 4.9679

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA9232	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.6	1.1e-14	118	181	2	67
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67 fY++YA++ GF +rk + k+ ng i +r+f C++eg+ + + + +ke+r+r+ +r++Cka+l+ Tp57577_TGAC_v2_mRNA9232 118 FYKRYAYQHGFAIRKGRFVKQ--NGIISRRDFFCYREGSVSLKIIDPSKEQRKRELSRCECKAHLR 181 9*************98877..******************99**************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.2E-12	118	180	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
VLKYTFYLLF LFVDDKQHNV MDSVNVIDMN FDLNECPIED ISHENGNSAI IVEHFDHAIV 60 ANDVLEVDDI GSFEKENLAP YSENIQVNQF LEEVDKDGQN IIPFVGQIFL TEEEAFAFYK 120 RYAYQHGFAI RKGRFVKQNG IISRRDFFCY REGSVSLKII DPSKEQRKRE LSRCECKAHL 180 RKFYLSC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA9232

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014622071.1	4e-71	protein FAR1-RELATED SEQUENCE 11-like isoform X4
TrEMBL	A0A445H0B1	2e-69	A0A445H0B1_GLYSO; Protein FAR1-RELATED SEQUENCE 11 (Fragment)
TrEMBL	A0A445JH67	3e-69	A0A445JH67_GLYSO; Protein FAR1-RELATED SEQUENCE 11 (Fragment)
STRING	AES62383	1e-51	(Medicago truncatula)
STRING	AES74601	4e-52	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15165	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	2e-20	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA9232