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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA8964 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
NAC |
Protein Properties |
Length: 431aa MW: 49358.1 Da PI: 7.0208 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA8964 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 163.7 | 6.5e-51 | 14 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyat 70
+ pGfrFhPtdeelv +yLk+k+++++l + e ik++diyk++PwdLp+ ++++ekewyf+++rd+ky++
Tp57577_TGAC_v2_mRNA8964 14 MLPGFRFHPTDEELVGFYLKRKIQQRPLAI-ELIKQLDIYKFDPWDLPNpvqvcflyilymfveLASTGEKEWYFYCPRDRKYRN 97
579************************999.89**************976899999999998865556899************** PP
NAM 71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
++r+nr+tk+g+Wkatg+d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
Tp57577_TGAC_v2_mRNA8964 98 STRPNRVTKAGFWKATGTDRPIYSSeGSRCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 156
***********************9966777***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 431 aa
Download sequence Send
to blast |
MEERNGCEKL DEIMLPGFRF HPTDEELVGF YLKRKIQQRP LAIELIKQLD IYKFDPWDLP 60 NPVQVCFLYI LYMFVELAST GEKEWYFYCP RDRKYRNSTR PNRVTKAGFW KATGTDRPIY 120 SSEGSRCIGL KKSLVFYKGR AAKGVKTDWM MHEFRLPSLI DSSSSPKKYV DKTIPANVSK 180 ICQIYIYLEH FCWYQLIDLE SWAICRIFKK TNATAQRALS HSWVPPLLET STSNVLTNDG 240 NQNQFYSSNM ILTKKPMINQ FCSTTNNTTQ QLTTSSSTTL CPLDVTSYND KPIIDPLIYK 300 PLYRLPFSND QDLNLSTGSL FSSPLETSCN KTSMDVSSLL LGMSSEGTTS NYTNGLQDHY 360 NNEYPFMANI IPNVNVPHVD EQELETVRSI GFPFTMPFNI GDAWKSSFVW DTSSCTSDEP 420 SSYSTTKCYT *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 6e-47 | 16 | 217 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-47 | 16 | 217 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-47 | 16 | 217 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-47 | 16 | 217 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-47 | 16 | 217 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-47 | 16 | 217 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-47 | 16 | 217 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-47 | 16 | 217 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-47 | 16 | 217 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-47 | 16 | 217 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-47 | 16 | 217 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-47 | 16 | 217 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-47 | 16 | 217 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-47 | 16 | 217 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |