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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA8959 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 395aa MW: 43217.5 Da PI: 9.2307 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.4 | 1.5e-32 | 66 | 125 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee...gtaaalkCaACgCHRnFHRrevee 59 ++ YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++e Tp57577_TGAC_v2_mRNA8959 66 SYSYKECLKNHAASLGGHALDGCGEFMPSSSSSinpNDPRSLKCAACGCHRNFHRREPQE 125 578*************************987764355699*****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.8E-28 | 67 | 123 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.874 | 69 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-20 | 69 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.5E-31 | 69 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.96E-16 | 267 | 338 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.9E-27 | 270 | 341 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.0E-25 | 280 | 337 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MTSRNIDADS QTPQSKQQTN INNNITPTTT TTLKSSSPFT NGTNKRHYTT ITTPPPPPPP 60 PLSSMSYSYK ECLKNHAASL GGHALDGCGE FMPSSSSSIN PNDPRSLKCA ACGCHRNFHR 120 REPQEHIITT TAATTTATPT NNNNYLSCIY TTPSTTVPPP QPPPPLQLPH RGPISQSTSP 180 SQSTSPSQSP SPISSPSSPP PLSHVPPSYH SSAPHMLLAL GNPYSTVTPP HSDHDQHHHH 240 HHHQRNLNFA SSVVKLENNN NINNNNNNNN NSIINTSSGK KRYRTKFSKE QKDKMHEFSE 300 KLGWRMQKGE DGLVQKFCND IGVSRGVFKV WMHNNKNNSL RKRSESDVGV GIATQGDDDN 360 KNNHDNDRSN NVIHMNQDAC VNVRVVSSVD GLSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-20 | 281 | 338 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA8959 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004509968.1 | 1e-121 | zinc-finger homeodomain protein 11-like | ||||
TrEMBL | A0A2K3L8D0 | 1e-171 | A0A2K3L8D0_TRIPR; Transcription factor HB29-like protein | ||||
STRING | XP_004509968.1 | 1e-121 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 3e-25 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA8959 |