PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA8835

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 280aa MW: 30498 Da PI: 4.6623

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA8835	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	97	119	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+ Fs++ L H++ H Tp57577_TGAC_v2_mRNA8835 97 FSCSFCHHKFSTQQALAGHQNAH 119 89******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.19E-5	94	125	No hit	No description
PROSITE profile	PS50157	11.281	97	124	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	99	119	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MTSSSSNNEQ KTQSSSNNNE GKNENTSEEN LPKSSSNNNE GKNENTSEEN LPKISSNNNE 60 VKNENTIEEN LPKISSNNNE GKIENSMEEK NADSRLFSCS FCHHKFSTQQ ALAGHQNAHR 120 AERALEKQRK ERYDGVGSSL GRPFNPNFIY PTSFFPPCTY RPLGVRMEAF IRKPPSASPN 180 IGLGALGLTD MLNPSLVSTK NNIEGCSNGV GVQGIGGETT PRIEDDAGHK FVDFLKVGDS 240 SNVASTSNIM DLNLNSNNEE ESSNSESESE SELDLTLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA8835

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013458912.1	6e-57	myb-like protein A
TrEMBL	A0A2K3NCH4	1e-149	A0A2K3NCH4_TRIPR; Zinc finger protein
STRING	AES78011	1e-52	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	3e-12	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA8835