PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8835
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 280aa    MW: 30498 Da    PI: 4.6623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8835genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002597119123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C+ C+  Fs++  L  H++ H
  Tp57577_TGAC_v2_mRNA8835  97 FSCSFCHHKFSTQQALAGHQNAH 119
                               89******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-594125No hitNo description
PROSITE profilePS5015711.28197124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTSSSSNNEQ KTQSSSNNNE GKNENTSEEN LPKSSSNNNE GKNENTSEEN LPKISSNNNE  60
VKNENTIEEN LPKISSNNNE GKIENSMEEK NADSRLFSCS FCHHKFSTQQ ALAGHQNAHR  120
AERALEKQRK ERYDGVGSSL GRPFNPNFIY PTSFFPPCTY RPLGVRMEAF IRKPPSASPN  180
IGLGALGLTD MLNPSLVSTK NNIEGCSNGV GVQGIGGETT PRIEDDAGHK FVDFLKVGDS  240
SNVASTSNIM DLNLNSNNEE ESSNSESESE SELDLTLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8835
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458912.16e-57myb-like protein A
TrEMBLA0A2K3NCH41e-149A0A2K3NCH4_TRIPR; Zinc finger protein
STRINGAES780111e-52(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.13e-12C2H2 family protein