PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8813
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 357aa    MW: 40223.7 Da    PI: 5.7645
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8813genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.57.7e-10176218345
                               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                               + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Tp57577_TGAC_v2_mRNA8813 176 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 218
                               568899************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-8168221No hitNo description
PfamPF077164.6E-7174220IPR004827Basic-leucine zipper domain
SMARTSM003389.6E-8174237IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415176220IPR004827Basic-leucine zipper domain
CDDcd147082.18E-22178230No hitNo description
SuperFamilySSF579595.0E-7178221No hitNo description
PROSITE patternPS000360181196IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGSRIRIGVE DEKGAEIGMP SFNSDDARYT EGNTVDSFHV SDFGSFGQTY RLEDAVALSG  60
NSNSVFNSIK VSGQNISPGP VHTSTLPTSL DKSPLTNQTE PHRLQLTNLQ SSNPGSGNIL  120
SVRTENQEEF AMADASPRTD ISTDGDTDDK NQRFDRNQSL APVGSDSSDR SKDKSDQKTL  180
RRLAQNREAA RKSRLRKKAY VQQLESSRLK LTQLEQELQR ARQQGVFISS SGEQTHSMSG  240
NGAMQFDAEY ARWLEEQNRQ INXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXILQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8813
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1473330.0BT147333.1 Medicago truncatula clone JCVI-FLMt-20A17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627926.11e-173transcription factor TGA2.2
RefseqXP_024628496.11e-173transcription factor TGA2.2
RefseqXP_024628497.11e-173transcription factor TGA2.2
RefseqXP_024628498.11e-173transcription factor TGA2.2
RefseqXP_024628499.11e-173transcription factor TGA2.2
RefseqXP_024628500.11e-173transcription factor TGA2.2
SwissprotQ6IVC28e-65TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLG7LGW21e-171G7LGW2_MEDTR; BZIP family transcription factor
STRINGAET024021e-172(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1588759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.26e-44TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]