PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8634
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 438aa    MW: 48370.5 Da    PI: 4.3065
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8634genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1784133255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr++  +g+Wv eIr+p   + r  r +lg+f ta+eAa a++ a+++++g
  Tp57577_TGAC_v2_mRNA8634  84 KYRGVRQRT-WGKWVGEIREP---N-RgSRLWLGTFPTAQEAALAYDYAARAMYG 133
                               8*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.52484141IPR001471AP2/ERF domain
SMARTSM003803.8E-3684147IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2184141IPR016177DNA-binding domain
CDDcd000186.21E-3284142No hitNo description
PfamPF008475.1E-1284133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3184142IPR001471AP2/ERF domain
PRINTSPR003673.9E-108596IPR001471AP2/ERF domain
PRINTSPR003673.9E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGASAYDQSY NVNLAPLELS KKRKIRSRGK GLKSVAEILA KWREYNERLY AGKDDGKPKR  60
KAPAKGSKKG CMKGKGGPQN SENKYRGVRQ RTWGKWVGEI REPNRGSRLW LGTFPTAQEA  120
ALAYDYAARA MYGPSARLNF PNISDYSSIK EYLKDSSSDD VAAAPAASCC SSVVTTPATS  180
ETTTLSSHSE VCAVEDVKEM FKIPVTMNNT VDVCYEVSSP TSRIKQEPKD EFADIIDPSG  240
GEIQDAKSEG IQKPKDELAD IIDPGGGEIQ DAKLEETQKH DVVQIGDGVC NDQMDFSWID  300
NFDFDFDLDF DFNGDDNKKN CSMDEFFQAE ELLGQLDNNP VDESGLMQSL NCGQMGFPEE  360
SNPQVGTSPS FFYELENPDA MLLGSLPHME HTDTTSGVDY ALDFFKIEEP VNCNGSLEDT  420
PFLDLNFDDV NYDSRGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1885141360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8634
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8462010.0EU846201.1 Trifolium repens putative dehydration-responsive element binding protein (DREB5-P') gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616701.10.0dehydration-responsive element-binding protein 2A
RefseqXP_024639092.10.0dehydration-responsive element-binding protein 2A
TrEMBLA0A2K3PNX90.0A0A2K3PNX9_TRIPR; Dehydration-responsive element-binding protein 2c-like
STRINGAES996590.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.27e-28DRE-binding protein 2A