PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8370
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 134aa    MW: 15376.3 Da    PI: 4.4905
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8370genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.6e-1140132799
                               .-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                        B3   7 psdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                s    +++l +pk++   +      +++ +++l d ++ +++   +i+ +++  ++v+++GW ++v++ +Lk+gD++vF l ++
  Tp57577_TGAC_v2_mRNA8370  40 DSTIELNDLLEIPKEYH--YifV--DQSQNEIILADNDSkQTYVCDIIFtQQTNLKIVIGRGWLDYVRDVNLKAGDTLVFLLYEN 120
                               555666789999*9995..4332..2345589999977626666677775455555*************************9999 PP

                               SEE..EEEEE-S CS
                        B3  88 sefelvvkvfrk 99 
                               + ++l+v ++++
  Tp57577_TGAC_v2_mRNA8370 121 HPEKLHVYIVDR 132
                               9999****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.75E-1232130IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.91134133IPR003340B3 DNA binding domain
CDDcd100179.00E-936131No hitNo description
Gene3DG3DSA:2.40.330.102.2E-1037131IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-940132IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MENGNNGNVG TNVLRNPEVS SSLPLAHHEN IAYWEFKVLD STIELNDLLE IPKEYHYIFV  60
DQSQNEIILA DNDSKQTYVC DIIFTQQTNL KIVIGRGWLD YVRDVNLKAG DTLVFLLYEN  120
HPEKLHVYIV DRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8370