PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8089
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 261aa    MW: 29153 Da    PI: 6.5663
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8089genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001886108123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+C+ C + F++   L  H+++H
  Tp57577_TGAC_v2_mRNA8089  86 YSCTFCRREFRSAQALGGHMNVH 108
                               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.66E-683113No hitNo description
Gene3DG3DSA:3.30.160.609.6E-484111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.15786113IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MATDIGLLSN MTQIQKSSQS QSQQHQPNPN SNTTIASQSP STWMWNPKHH QHQQNDEEED  60
EDSWEVRAFA EDTRNIMNTT WPPRSYSCTF CRREFRSAQA LGGHMNVHRR DRARLHQNQP  120
PLNSSHHHPS SSPFINIPPQ ELVANAGLCF LYHLPNPNSN NVIASSFNGS NGETPSTLLS  180
ISSSTSYPPN NLMMQMQMQT CSPPPSFNFQ ANSARNMINH SISSFSSKVD QQTAICTSID  240
DNNGHGIEEL DLELRLGNKP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-1281108229superman protein
2l1o_A1e-1281108229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8089
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611481.11e-113transcriptional regulator SUPERMAN
TrEMBLA0A2K3MRL10.0A0A2K3MRL1_TRIPR; Putative transcriptional regulator RABBIT EARS-like protein
STRINGAES944391e-113(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-33C2H2 family protein