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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA7986 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 161aa MW: 18336.5 Da PI: 6.7814 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.7e-19 | 88 | 141 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa+ k Tp57577_TGAC_v2_mRNA7986 88 KKRRLSSEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARFK 141 56689***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 119.9 | 1.4e-38 | 88 | 160 | 2 | 74 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 kkrrls+eqv++LE+sFe e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdy +Lk+++d+lk Tp57577_TGAC_v2_mRNA7986 88 KKRRLSSEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDNLK 160 9*********************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.75E-19 | 76 | 145 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.475 | 83 | 143 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.5E-18 | 86 | 147 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.8E-16 | 88 | 141 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.12E-16 | 88 | 144 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-20 | 90 | 150 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.2E-6 | 114 | 123 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 118 | 141 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.2E-6 | 123 | 139 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.7E-7 | 143 | 160 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MAGGKLFGGS NMSLLLQNER LPCSSEVLES LWVHTPASFH GTNSVVDFEN GGGGGSRVVT 60 DRSFYQQLEK EENCGDDDYE ACFHQQGKKR RLSSEQVQFL EKSFEVENKL EPERKVQLAK 120 DLGLQPRQVA IWFQNRRARF KTKQLEKDYG TLKASFDNLK D |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 143 | RRARFKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA7986 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. | |||||
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146413 | 0.0 | BT146413.1 Medicago truncatula clone JCVI-FLMt-17A18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014521387.2 | 6e-89 | LOW QUALITY PROTEIN: homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q6K498 | 2e-33 | HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4 | ||||
Swissprot | Q8LC03 | 4e-33 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
Swissprot | Q9XH37 | 2e-33 | HOX4_ORYSI; Homeobox-leucine zipper protein HOX4 | ||||
TrEMBL | A0A2K3MV93 | 1e-113 | A0A2K3MV93_TRIPR; Homeobox-leucine zipper protein HAT5-like | ||||
STRING | AES96536 | 1e-103 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 2e-35 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA7986 |
Publications ? help Back to Top | |||
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