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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA7986 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
HD-ZIP |
Protein Properties |
Length: 161aa MW: 18336.5 Da PI: 6.7814 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA7986 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 59.7 | 4.7e-19 | 88 | 141 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa+ k
Tp57577_TGAC_v2_mRNA7986 88 KKRRLSSEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARFK 141
56689***********************************************98 PP
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2 | HD-ZIP_I/II | 119.9 | 1.4e-38 | 88 | 160 | 2 | 74 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74
kkrrls+eqv++LE+sFe e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdy +Lk+++d+lk
Tp57577_TGAC_v2_mRNA7986 88 KKRRLSSEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDNLK 160
9*********************************************************************997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 161 aa
Download sequence Send
to blast |
MAGGKLFGGS NMSLLLQNER LPCSSEVLES LWVHTPASFH GTNSVVDFEN GGGGGSRVVT 60 DRSFYQQLEK EENCGDDDYE ACFHQQGKKR RLSSEQVQFL EKSFEVENKL EPERKVQLAK 120 DLGLQPRQVA IWFQNRRARF KTKQLEKDYG TLKASFDNLK D
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 135 | 143 | RRARFKTKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT146413 | 0.0 | BT146413.1 Medicago truncatula clone JCVI-FLMt-17A18 unknown mRNA. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Ribone PA,Capella M,Chan RL
Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] - Wang X, et al.
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]
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