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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA7852 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 152aa MW: 16737.7 Da PI: 10.1294 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00062 | 120 | 143 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+Cp C+ + +++ + +H + H Tp57577_TGAC_v2_mRNA7852 120 YTCPTCKIVLTTSQKYANHVKWiH 143 9******************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 122 | 144 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MNIEKLREWA FGHNTVTNTH NRSSSNVESS SSSSSLINND MDNVINQNMM MTNANVASIH 60 PDLVGGLLSH SEPTSQTSNV AATNGDEFGD GSNNRKKKKK KKNVDDGSIR SLPYKKYGPY 120 TCPTCKIVLT TSQKYANHVK WIHHKDGKKK T* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 100 | NRKKKKKK |
2 | 95 | 101 | KKKKKKK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00523 | DAP | Transfer from AT5G22990 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA7852 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3KIB6 | 5e-60 | A0A2K3KIB6_TRIPR; C2H2-type zinc finger protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22990.1 | 8e-13 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA7852 |