PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA7839

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 144aa MW: 15758.5 Da PI: 9.7886

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA7839	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	112	135	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+Cp C+k +++ ++ +H + H Tp57577_TGAC_v2_mRNA7839 112 YTCPFCNKKVTTSQLFASHVKWnH 135 9*******************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.6	112	141	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	114	136	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MNIDKLREWA NGNNTITKTC DHSPSSSATN KFGSHAAGIR KAMQILESQF ALSDNPDLFG 60 GSSSHPQEPI NAIATNGDEF GEGDNNNRKK KSPKKNDDGS IHSIPCQKYG PYTCPFCNKK 120 VTTSQLFASH VKWNHHKDGK KKK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA7839

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024636802.1	6e-24	uncharacterized protein LOC112421048
TrEMBL	A0A2K3LCC5	1e-100	A0A2K3LCC5_TRIPR; C2H2-type zinc finger protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18490.1	1e-09	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA7839