PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA7596

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 138aa MW: 16135.9 Da PI: 10.5402

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA7596	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	26.2	1e-08	11	54	1	44
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k i+n+ r+ +f++Rr+g++KK + S +ev++i+ +g Tp57577_TGAC_v2_mRNA7596 11 KHIQNEKVRKSSFIQRRKGLIKKVSKFSKNFRVEVCLIVCDGDG 54 689************************************87766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0012	1	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.741	3	63	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-13	5	80	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-9	13	54	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MGRGGGKVTL KHIQNEKVRK SSFIQRRKGL IKKVSKFSKN FRVEVCLIVC DGDGDSKPMT 60 WPQDLSTLQS MLTKYEQQKI ETTPKKFDMQ DYFANKKNMV EAEILNVRKK IVMNKYPTWG 120 RPFNNLEMEQ LRSFVDIV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA7596

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003595578.1	2e-48	MADS-box transcription factor 5
TrEMBL	A0A2K3LQC5	5e-66	A0A2K3LQC5_TRIPR; MADS-box transcription factor (Fragment)
STRING	AES65829	7e-48	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	2e-13	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA7596