PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7068
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 640aa    MW: 74773.2 Da    PI: 7.3007
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7068genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000662748121
                              EEETTTT.EEESSHHHHHHHHH CS
                   zf-C2H2  1 ykCpdCg.ksFsrksnLkrHir 21
                              y+Cp C+ k + + s+L+rH +
  Tp57577_TGAC_v2_mRNA7068 27 YRCPFCDnKDYYSLSELQRHAS 48
                              9*******************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF034701.8E-42967IPR005381Zinc finger-XS domain
PfamPF034681.1E-33104218IPR005380XS domain
CDDcd122668.24E-35107217IPR005380XS domain
PfamPF034693.5E-46489631IPR005379Uncharacterised domain XH
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080188Biological ProcessRNA-directed DNA methylation
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
DFDYYQDRYY SDLKDGYCRL KISGSTYRCP FCDNKDYYSL SELQRHASRI MDDSRETVKE  60
SAKHSALKMY IGKEEPPTVK TSREKLPALS IAENQSPNEI VAGDELFVWP WMVILANNVT  120
TFDPKSGKYV GKNREKIKEE LIMKGFQPLK VTVLWNFYGQ TPFAIVEFGK EWDAFHNAVM  180
LERSFQAEHC GKKDYLNLDK QGRGDRLYGW MARHDDYNNY RDTFGKHLRA NGDLKTVSGK  240
EAEDNRKAKK LVIGLANTLL MKNKEYEQTA SKFHEASETL TKVMVQKEEM LELFNKEISK  300
MRQDERDYLE NVSKDHEKAR LELEARRNVL MSREKDLQKR QADNHNEREK LYLEKKRNEM  360
AIAEQKKADE QMMHLAEEHK KAKEKLHKKI HELERGLDAK HGLELEIEQL RGALQVMNHI  420
GDTDLEEKKK LEAIKMDLKE KEEELKDVED LQQTLVVQER KTNDELQDAR KTLTSWIGCP  480
NARAIISVKM MGKLDIKPFE EAAERKLSDD VNMKAATKTK LSSEVKLKAI EWCSQWEEYL  540
KDPSWHPFKI VIDKEGNSKE ILDEEDEKLK SLKEELGDEV HDAVATALKE MNEYNPSGRY  600
TVPELWNFRE GRKASLKEGV CHLMKQWKLL KPTTKRKRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4e8u_A8e-311042526150Putative uncharacterized protein T8P19.180
4e8u_C8e-311042526150Putative uncharacterized protein T8P19.180
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs in association with FDM3 and FDM5 for RNA-directed DNA methylation (RdDM). {ECO:0000269|PubMed:22302148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7068
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487000.10.0factor of DNA methylation 4
SwissprotQ9LMH61e-150FDM4_ARATH; Factor of DNA methylation 4
TrEMBLA0A396JD490.0A0A396JD49_MEDTR; Putative XS domain-containing protein
STRINGXP_004487000.10.0(Cicer arietinum)
Publications ? help Back to Top
  1. Xie M,Ren G,Costa-Nunes P,Pontes O,Yu B
    A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation.
    Nucleic Acids Res., 2012. 40(10): p. 4422-31
    [PMID:22302148]