PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7003
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 29491.2 Da    PI: 9.7115
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7003genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.8e-312877150
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                              krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Tp57577_TGAC_v2_mRNA7003 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 77
                              79***********************************************8 PP
2K-box105.18.9e-3597190598
                     K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                                 ks++e++ + +qqe+akL+ +i+nLq+ +R+++Ge L++++ k+L++Le +Lek+++++RskKne+l++++e++qk+e el++
  Tp57577_TGAC_v2_mRNA7003  97 GAKSASESNVQFYQQESAKLRVQISNLQNHNRQMMGEALSNMNGKDLKNLEAKLEKGISRVRSKKNEMLFAELEYMQKREIELHN 181
                               445699******************************************************************************* PP

                     K-box  90 enkaLrkkl 98 
                                n+ Lr+k+
  Tp57577_TGAC_v2_mRNA7003 182 SNQVLRAKV 190
                               ******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.3E-402079IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.0952080IPR002100Transcription factor, MADS-box
CDDcd002652.16E-432194No hitNo description
SuperFamilySSF554552.09E-322192IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-332242IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002276IPR002100Transcription factor, MADS-box
PfamPF003192.1E-262976IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-334257IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-335778IPR002100Transcription factor, MADS-box
PfamPF014867.1E-25102190IPR002487Transcription factor, K-box
PROSITE profilePS5129713.79106202IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSFPNQSMPD SPQRNSALKS GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA  60
EVALIVFSTR GRLYEYANNS VKASIERYKK ACSDTSGAKS ASESNVQFYQ QESAKLRVQI  120
SNLQNHNRQM MGEALSNMNG KDLKNLEAKL EKGISRVRSK KNEMLFAELE YMQKREIELH  180
NSNQVLRAKV CYYLSISESE RSNHNVNVFP GGTNFECMHA QQQQQQQFDS RGYFQVNELQ  240
PNDQYARQDQ MSLQFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A1e-192188168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B1e-192188168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C1e-192188168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D1e-192188168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1598050.0KF159805.1 Medicago truncatula cultivar Jemalong A17 MADS-box transcription factor AGAMOUSb (AGb) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629877.11e-163floral homeotic protein AGAMOUS isoform X1
SwissprotQ408721e-116AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLG7L7Z61e-162G7L7Z6_MEDTR; AGAMOUSb
STRINGAET043531e-162(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-114MIKC_MADS family protein