PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6931
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 509aa    MW: 56228.5 Da    PI: 7.0094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6931genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-1777133255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                ++GVr++  +g+WvAeIr+p + g     k  r +lg+f ta eAa a+++a+k+++g
  Tp57577_TGAC_v2_mRNA6931  77 NFRGVRQRI-WGKWVAEIREPIN-GkhvgeKAHRLWLGTFSTAHEAALAYDKAAKAMYG 133
                               69****998.**********855.44876666************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-1376133IPR001471AP2/ERF domain
CDDcd000186.98E-3276142No hitNo description
PROSITE profilePS5103221.78677141IPR001471AP2/ERF domain
SMARTSM003805.0E-3677147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-2877142IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1877141IPR016177DNA-binding domain
PRINTSPR003671.5E-87889IPR001471AP2/ERF domain
PRINTSPR003671.5E-8107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MKIDTVTGER KSRKRRSGGR SDSVEDTLEK WKNYNKQQQQ KLGCGDNGAE KIHKVPAKGS  60
RKGCMRGKGG PQNSDCNFRG VRQRIWGKWV AEIREPINGK HVGEKAHRLW LGTFSTAHEA  120
ALAYDKAAKA MYGPSARLNF PNGSPSPSSS GGSADSLNGE EDLAKVEELE GNLHQSDEEN  180
KILSKNFVAD DDSVEESEEV MIVGTAQCQA NKKCKKMVHQ ESYKNVKSEK PVESERLESK  240
SENVLENSGI GECYHVQKEP IDSSINSGAA CRPSDIAENG ILVKNGETIR GSGEDLKSFE  300
MSCNNNFFGN LHNILPDSNQ RPDSEYFNIK TEASLAKKHK KEVIGHFLSH AQSQNEQNKN  360
GGFGEMKSEL KGLEFKLRGQ STDCKSDEAQ IVPYMQGIHL SDGGTVGTIE RISQVEALNN  420
NTNKNTKLKE RGNNGCALHG LSSGQSRKLS DLSQQLQRLG GYLPENWNNM QFADLEVGYD  480
YSFLKPDYDF GLLEEKKLLD ICFSHIGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1777141260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11116SRKRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6931
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1518750.0CU151875.4 M.truncatula DNA sequence from clone MTH2-49J7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623385.20.0uncharacterized protein LOC11408065
TrEMBLA0A2K3PD060.0A0A2K3PD06_TRIPR; Dehydration-responsive element-binding protein 2c-like (Fragment)
STRINGAES796030.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.17e-31ERF family protein