PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6819
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 462aa    MW: 51778.5 Da    PI: 7.9997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6819genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-0593115123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               + C++C+k F r  nL+ H r H
  Tp57577_TGAC_v2_mRNA6819  93 FICEICNKGFQRDQNLQLHKRGH 115
                               89******************988 PP
2zf-C2H212.30.00053170192123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC +C+k +  +s+ k H +t+
  Tp57577_TGAC_v2_mRNA6819 170 WKCDKCSKKYAVQSDWKAHSKTC 192
                               58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.11E-792115No hitNo description
Gene3DG3DSA:3.30.160.606.9E-692115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.80393115IPR007087Zinc finger, C2H2
PfamPF121713.0E-593115IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.02293115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SMARTSM00355190135165IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.6E-4158191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.11E-7165190No hitNo description
SMARTSM00355150170190IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MIKGFMFQQQ PLEEENMSNL TSASGEASAN SSGNRNEIGT NYHHQQYLAP SQSTQTHDEP  60
PPPKKRRNLP GNPDPEAEVI ALSPKTLMAT NRFICEICNK GFQRDQNLQL HKRGHNLPWK  120
LKQRASNEII RKKVYVCPEP TCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKKYA  180
VQSDWKAHSK TCGTREYKCD CGTLFSRRDS FITHRAFCDA LAEESSKAII PPPSPIPQPN  240
SHNMINLQTQ DFSLKKEHQN FSFLRQEQEI QIPSWLYQSS NIDISSSNYS RLDQNQIQSL  300
DENPNPRNGP TFPSYHQPSE ISPHMSATAL LQKAAQMGST SSSQQSMIMI SGTHKHCHVS  360
VDDNNLSSCE DQIINNFSSS GFDGTSFENT YAKNILNSNH HDHRNDGGVG AGGNDGFTRD  420
FLGLRPLSDS EILNIAGMGN CMNSSNSHRE QNQSLKPWQG N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-35166227364Zinc finger protein JACKDAW
5b3h_F7e-35166227364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119132KLKQRASNEIIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6819
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1489181e-179AC148918.3 Medicago truncatula chromosome 2 clone mth2-44o11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597597.20.0protein indeterminate-domain 11 isoform X1
SwissprotQ8H1F51e-136IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2K3PS710.0A0A2K3PS71_TRIPR; Zinc finger protein NUTCRACKER-like
STRINGAES678480.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-106indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]