PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6711
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 233aa    MW: 26400.8 Da    PI: 9.0261
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6711genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.3e-11108149351
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                                +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  Tp57577_TGAC_v2_mRNA6711 108 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 149
                               79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-5107150IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-7108152IPR016177DNA-binding domain
SMARTSM003806.9E-4109166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-6110158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGSCSFV SPLPLYCENL TGSENSSWKA KPKSEKPMLS DDASILDSNT  60
VVQEEPGSSN NSGSSSSKDQ LTQQTLGPPV KRRKRHRRKN LHSQEACMRG VYFKNMKWQA  120
AIKVDKKQIH LGTVGSQEEA AHLYDRAAFM CGREPNFELP EEEKQELRKF KWDDFLAMTR  180
QAITRKKVKR WISPELPNSL EMHRLEKDDC ESKQGVSGFS AYEDAEQETS VS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6711
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515034.11e-121ethylene-responsive transcription factor-like protein At4g13040 isoform X4
TrEMBLA0A2K3N4291e-172A0A2K3N429_TRIPR; Ethylene-responsive transcription factor-like protein at4g13040-like protein
STRINGXP_004515031.11e-116(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-41ERF family protein