PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6705
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 352aa    MW: 39752 Da    PI: 8.4364
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6705genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-096686526
                              --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                               C+ ++r G C++Gd+C FaHg
  Tp57577_TGAC_v2_mRNA6705 66 VCPEYRR-GSCNRGDSCEFAHG 86
                              7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.02E-56090IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-66187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5826288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-56588IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-76686IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.28796120IPR000571Zinc finger, CCCH-type
SMARTSM003562.496119IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MYYIKLMHCM HTSLCIRHVF RRYXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXRDPRRF  60
HYSGTVCPEY RRGSCNRGDS CEFAHGVFEC WLHPARYRTE ACKDGKNCKR KVCFFAHTPR  120
QLRILPVTSS SSSNEHFSCN KKNNKILNNH VASKSNNCCL YCHCGGNGAN DSPTSTLFGM  180
SHFSSPPASP PMSPMKPRNS VSSLSRYGSS INSNNLRYRD MLIELLGSFD GLNFNEGSSS  240
SSSPVSGAKA LQNQIQNNMN MGYLDIPLNS EEHIQNQNQF IVSPSSFDNQ QQHFNILSPI  300
HQNLTVPSFN DIDDNNMVNN RMMFLGNNEN NKVVVGGGDA PDLGWVNELL M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6705
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487266.11e-127zinc finger CCCH domain-containing protein 61
TrEMBLA0A2K3PI350.0A0A2K3PI35_TRIPR; Zinc finger CCCH domain-containing protein 2-like
STRINGXP_004487266.11e-127(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-45C3H family protein