PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA6689

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 286aa MW: 32772.9 Da PI: 8.3049

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA6689	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.2	1.6e-32	49	189	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 lp+G++F+Ptd+e++ e+L++kv+++ ++++ ++ +i+ ++P++Lp v+++ +fF++ +k+y+tg+rk+r+ Tp57577_TGAC_v2_mRNA6689 49 LPAGVKFDPTDQEIL-EHLEAKVRSDIqmlhplIDEFIPtLEGEnGICCTHPEKLP-GVAKDGLIRHFFHRPSKAYTTGTRKRRK 131 799*********9.99*99886665442222222433336******.454555677**************7 PP NAM 78 tk......sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++ + +W++tgk+++v+ +g+l+g kk+Lv+y++ +++k+ekt+Wvmh+y+l Tp57577_TGAC_v2_mRNA6689 132 VHtdedgsETRWHKTGKTRPVYI-NGKLKGYKKILVLYTNyrKQRKPEKTNWVMHQYHL 189 44446555788********.999*******5444788889*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.11E-38	44	208	IPR003441	NAC domain
PROSITE profile	PS51005	32.416	49	208	IPR003441	NAC domain
Pfam	PF02365	1.4E-15	50	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MTQCSYPENN HHSVLMERRK DSLIRTCPTC GHHIKCQDQG AGIHELPGLP AGVKFDPTDQ 60 EILEHLEAKV RSDIQMLHPL IDEFIPTLEG ENGICCTHPE KLPGVAKDGL IRHFFHRPSK 120 AYTTGTRKRR KVHTDEDGSE TRWHKTGKTR PVYINGKLKG YKKILVLYTN YRKQRKPEKT 180 NWVMHQYHLG NNEEEKEGEL VVSKVFYQTQ PRQCGSLMKE SSSFSDQKLI NDNQGVHEVV 240 NHKNSGFVEY YNTSFISFDQ GEQHRSNNAQ VVSHFPVHDG NSFIP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA6689

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013465160.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	1e-114	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A072VM12	0.0	A0A072VM12_MEDTR; NAC transcription factor-like protein
STRING	XP_004487194.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-104	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA6689

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]