PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA6640

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 275aa MW: 31497.1 Da PI: 10.4168

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA6640	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.1e-09	18	65	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++E++RR++++ f++L +llP + p++ + ++ + ++++YIksL+ Tp57577_TGAC_v2_mRNA6640 18 RKIVEKNRRNQMKILFSKLNSLLPYN---PKEVVPLIDQVDETINYIKSLE 65 689********************9...9999**************96 PP
2	HLH	20.4	9.4e-07	225	251	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +++E+ RR+++++ f++L +llPk Tp57577_TGAC_v2_mRNA6640 225 ERKIVEKIRRNHMKNLFSKLNSLLPKY 251 5689*********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.604	13	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-10	14	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.83E-4	15	69	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-8	16	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-6	18	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-4	19	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-5	219	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-5	223	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDHNKQSVQP SSTIKVERKI VEKNRRNQMK ILFSKLNSLL PYNPKEVVPL IDQVDETINY 60 IKSLETNVKL AKEKKESLLR NKRSRSGCSS STCGAKGSIK SPKIEIHEMG FSLQIIVTCG 120 VDDQFIFYEI IRILNEENVE VISANSSLTG DSNFHIVHAE IPQSLFQFGG TKVSDRLKSF 180 VNGFKRNCVE RTKRXXXXXX XXXXXXXXXX XXXXXQPSSS STKVERKIVE KIRRNHMKNL 240 FSKLNSLLPK YNHKVLCFFP SRAYIYNGNN TIFI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA6640

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024632925.1	3e-90	transcription factor bHLH162
TrEMBL	A0A072VCG2	2e-90	A0A072VCG2_MEDTR; Helix loop helix DNA-binding domain protein
STRING	GLYMA12G12880.1	6e-77	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF906	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA6640