PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA6397 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bZIP | ||||||||
Protein Properties | Length: 894aa MW: 95302.6 Da PI: 8.8423 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 64.4 | 2e-20 | 239 | 301 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN +L+ el+++k e++k se+ Tp57577_TGAC_v2_mRNA6397 239 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNEENASLRAELSRIKSEYEKALSEN 301 89********************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16596 | 4.8E-46 | 68 | 206 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-16 | 232 | 296 | No hit | No description |
Pfam | PF00170 | 1.2E-18 | 239 | 301 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 2.2E-20 | 239 | 303 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.576 | 241 | 304 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.63E-9 | 242 | 295 | No hit | No description |
CDD | cd14702 | 1.40E-23 | 244 | 294 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 246 | 261 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF04172 | 1.5E-41 | 657 | 881 | IPR007300 | CidB/LrgB family |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009853 | Biological Process | photorespiration | ||||
GO:0097339 | Biological Process | glycolate transmembrane transport | ||||
GO:1901975 | Biological Process | glycerate transmembrane transport | ||||
GO:0009706 | Cellular Component | chloroplast inner membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043879 | Molecular Function | glycolate transmembrane transporter activity | ||||
GO:1901974 | Molecular Function | glycerate transmembrane transporter activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 894 aa Download sequence Send to blast |
MMPPYGTPPH PYVTMYPHHG GIYAHPSMPP GSYPFSPYAM PSPNGMVDAS GNTPGSSEAD 60 GKPHEVKEKL PIKRSRGSMG SMNMVTGRNN ELGKTPGASA NGIHSKSGGE SASEGTSEGS 120 NENSHNDSQL KSGERHDSYE DHEPSQNGNS AHAPQNGVLN TPPTVNQTMS VVPMSVAGPL 180 TTVPAPATNL NIGMEYWGTP TSSTIPAMHG KVPSTAVAGG MVNAGPRDGV HSQLWLQDER 240 ELKRQRRKQS NRESARRSRL RKQAECDELA QRAEVLNEEN ASLRAELSRI KSEYEKALSE 300 NAVLKERLGE IPRSEDLGPG QNDQHVGCEH TGSRLISAAS NPQKLTLLAI SMATHLLISP 360 FSLLTNHSLK PPSFFHSTLS ANSTPLLLPC IKKCSILCNP TTPIRLNSSF LQKGSHGNSK 420 SRQLSTKSAE TDSGSTSSLT QNVFGLLHLI VSLGLFLALD QFLKKAFVAA AIKFPSALFG 480 MFCIFSVLII LDSTVPPAAK ALVNFFEPAF LFIQRWLPLF YVPSLVVLPL SVKDIPAASG 540 IKICLIVXXX XXXXXXITTH YLDMLINALT YTPDTTLTLG GWLATLCVAG YTAIAVRKAV 600 KTQLVDAEPM GKPSPFSTVE VWTWSGILLT SFVSALYYPT LLGTSARTSL PFLLASTVLG 660 YIVGSGLPSN VKKVFHPIIC CALSAVLTAF AFGYFSKLGL DPVLGYYLTK VSADPGAGDI 720 LMGFLGSVIL SFSFSMFKQR KLVKRHAAEI FTSVIISTIF SLYSTALVGR LLQLEPSLTV 780 SILPRCITVA LALSIVSLFD GANPSLTAAV VVVTGLVGAN FVQATLDKLR FSDPIARGIA 840 TASSAHGLGT AALSAKEPEA LPFCAIAYAL NGIFGSLLCS VPIVRESLLA IVG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 255 | 261 | RRSRLRK |
2 | 255 | 262 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Glycolate/glycerate transporter required for photorespiration. {ECO:0000269|PubMed:21916894, ECO:0000269|PubMed:22180599, ECO:0000269|PubMed:23382251}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA6397 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT145998 | 0.0 | BT145998.1 Lotus japonicus clone JCVI-FLLj-21E7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013446236.1 | 0.0 | plastidal glycolate/glycerate translocator 1, chloroplastic isoform X1 | ||||
Swissprot | Q9FVQ4 | 0.0 | PLGG1_ARATH; Plastidal glycolate/glycerate translocator 1, chloroplastic | ||||
TrEMBL | A0A072TTT5 | 0.0 | A0A072TTT5_MEDTR; Membrane protein, putative | ||||
STRING | GLYMA16G15800.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6767 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 1e-122 | basic region/leucine zipper transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA6397 |