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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA6340 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
ARF |
Protein Properties |
Length: 703aa MW: 77803.2 Da PI: 7.6558 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA6340 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 76.6 | 2.7e-24 | 111 | 212 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78
f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD
Tp57577_TGAC_v2_mRNA6340 111 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaAEPPVQ--TVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGD 193
89****************************996555555..8******************************************* PP
EEEEEE-SSSEE..EEEEE-S CS
B3 79 fvvFkldgrsefelvvkvfrk 99
+vvF + +++el+v+++r+
Tp57577_TGAC_v2_mRNA6340 194 SVVFL--RAENGELCVGIRRA 212
*****..449999******97 PP
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2 | Auxin_resp | 118.3 | 6.4e-39 | 282 | 365 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
a++ a+++++FevvY+Prast+eF+vk+++v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
Tp57577_TGAC_v2_mRNA6340 282 AVKLAANNQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWfMGTIASVQVVDPIRWPNSPWRLLQ 365
67899*****************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 703 aa
Download sequence Send
to blast |
MKETEKGYLD PQLWHACAGG MVQIPQVNSK VYYFPQGHAE HANTNIDLRV SVPPLILCKV 60 VAVKFLADPE SDEVFAIIKL LPLRNSEFGY GEESCGGGGD GLENSEKPAS FAKTLTQSDA 120 NNGGGFSVPR YCAETIFPRL DYAAEPPVQT VVAKDVHGEL WKFRHIYRGT PRRHLLTTGW 180 SSFVNQKKLV AGDSVVFLRA ENGELCVGIR RAKKGIGSGF DGSSCGWTSG SGSNNGNCGI 240 GPFGAFSFFL KEENKTSRNG FVGVDGNLSG RVRVRHEDVM EAVKLAANNQ PFEVVYYPRA 300 STPEFCVKAS SVRAAMRIQW CSGMRFKMPF ETEDSSRISW FMGTIASVQV VDPIRWPNSP 360 WRLLQVTWDE PDLLQNVKRV SPWLVELVSN VPVIHFSPFT PPRKKLRFPQ NLDFPLDVQF 420 PSPTFSGNQL GLNSPLFGLS DNAPACIQGA RHAQFGGISL SDLNLNNNKL QLGLFPTNIQ 480 HLDVRNRISN GNNMMTDNNK NKESLSCLLT IGKKSDKSLE KSQSDDDVVK KHQFCLFGQP 540 ILTEQQISRN CSEKDLVDES KDKEKWFLDA FSAGKGSDAT EFSWQLGLDI GHCKVFMESE 600 DVGRTLDLSL LGSYEELYKK LANMFDLEKS EMLNRVFYRD ATGAVKQTGE EPFSEFMKTA 660 KRLTILTDSG SKNVRGAWIT GTHKGEHGLN ASNKTGPLSI FA*
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC207600 | 7e-86 | AC207600.4 Medicago truncatula chromosome 2 BAC clone mth2-31i16, complete sequence. |