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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA6311 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | B3 | ||||||||
Protein Properties | Length: 103aa MW: 12014.1 Da PI: 9.3125 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.8 | 1.5e-16 | 14 | 101 | 17 | 98 |
E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 +pk+f + h ++++++ ++ l+ ++gr+W +++ +r + gr + +kGWk F+++n+Lk+gD++ F+l + + +++v Tp57577_TGAC_v2_mRNA6311 14 NIPKEFGKIHlsDLDNKQ-GDIHLRLLNGRVWPLRYLIRINNGRvikyEMCSKGWKTFAEDNNLKVGDVCKFELLPTnTIVTFTV 97 59*****888*9655444.499999***********9988888866766788*********************885547777788 PP EEE- CS B3 95 kvfr 98 ++f+ Tp57577_TGAC_v2_mRNA6311 98 HIFK 101 8875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.632 | 1 | 102 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-8 | 5 | 99 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.9E-18 | 11 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.14E-19 | 12 | 101 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-17 | 13 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.8E-15 | 15 | 101 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MNICIFIFFV AWQNIPKEFG KIHLSDLDNK QGDIHLRLLN GRVWPLRYLI RINNGRVIKY 60 EMCSKGWKTF AEDNNLKVGD VCKFELLPTN TIVTFTVHIF KD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA6311 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024634792.1 | 2e-23 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A2Q2N5 | 4e-38 | A2Q2N5_MEDTR; Transcriptional factor B3 | ||||
STRING | AES78894 | 2e-36 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA6311 |