PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6244
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 408aa    MW: 45293.4 Da    PI: 7.3566
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6244genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC173.52.2e-542303331101
                     NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 
                               ql++fw +q   iek+tdfknh+lPlarikki+kadedvkmisaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa
  Tp57577_TGAC_v2_mRNA6244 230 QLQAFWGNQyqeIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA 314
                               89****9999999************************************************************************ PP

                     NF-YC  83 vtrtdifdflvdivprdel 101
                               +t tdifdflvdivpr++l
  Tp57577_TGAC_v2_mRNA6244 315 ITGTDIFDFLVDIVPREDL 333
                               ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.35E-32219324IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.1E-37244316IPR009072Histone-fold
PfamPF008085.4E-21252315IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MCIFSGALDR KLQGQCIQKP IVVDRGNNGY CSACELQSVE VVNGKVLVLA LVQDFPTREE  60
STIHLLNSRA VRNLSWWKIS EGRSGSSIHR TKNIPNRASG VRTEQLLLSL SGIDLSNNTD  120
FPSPPSLPLS NFSYPYQVIH IFRPRFTLRT RMDPQGHGQN PSMGVVGGGQ MAAYGSNPYQ  180
PNHLTGSPGM VVPNVGNIQP GGQPDGTQLG QHQLAYQHIH QQQQQQQQQQ LQAFWGNQYQ  240
EIEKVTDFKN HSLPLARIKK IMKADEDVKM ISAEAPVVFA RACEMFILEL TLRSWNHTEE  300
NKRRTLQKND IAAAITGTDI FDFLVDIVPR EDLKDEVLAS IPRGPMPVGG PADGIPYCYM  360
PPQNAQQAGN PGLMMHNPNM YAPQSHPYMA PQMWPQPSEQ QPSPSDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-58238330395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302308RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6244
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0517930.0BT051793.1 Medicago truncatula clone MTYF5_F6_F7_F81G-P-7 unknown mRNA.
GenBankBT1433020.0BT143302.1 Medicago truncatula clone JCVI-FLMt-11D22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495741.11e-162nuclear transcription factor Y subunit C-3-like
RefseqXP_004495742.11e-162nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B27e-84NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A2K3KZT70.0A0A2K3KZT7_TRIPR; Nuclear transcription factor Y subunit C-9-like protein
STRINGXP_004495741.11e-161(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.45e-80nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Gnesutta N, et al.
    CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.
    Plant Cell, 2017. 29(6): p. 1516-1532
    [PMID:28526714]
  7. Bi C,Ma Y,Wang XF,Zhang DP
    Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis.
    Plant Mol. Biol., 2017. 95(4-5): p. 425-439
    [PMID:28924726]
  8. Liu X, et al.
    Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering.
    Plant Physiol., 2018. 177(1): p. 105-114
    [PMID:29599268]