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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA6225 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 321aa MW: 36070.1 Da PI: 10.1389 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.4 | 4.9e-15 | 32 | 81 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ykGVr++ +g+Wv+eIr ps+ ++r++lg+f +++Aa a++ a+++++ge Tp57577_TGAC_v2_mRNA6225 32 IYKGVRQR--NGKWVCEIRQPSN---KTRVWLGTFSHPDMAAIAYDVAALAFKGE 81 69***975..6*********965...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.6E-9 | 31 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.70E-27 | 31 | 90 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-27 | 32 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-18 | 32 | 90 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.058 | 32 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-30 | 32 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-6 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-6 | 70 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF50978 | 6.6E-15 | 98 | 289 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 30 | 112 | 151 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.25 | 118 | 151 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 3.5E-13 | 120 | 169 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 2 | 201 | 236 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 3.5E-13 | 205 | 287 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 27 | 241 | 281 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
KLLDRWTHIF ITHKMNKRRA GRKKFHETRH PIYKGVRQRN GKWVCEIRQP SNKTRVWLGT 60 FSHPDMAAIA YDVAALAFKG EDASLNFPHS ASSLPRLNSR TSSIRSIQFA ATKAAEKHFS 120 SSMRITSVLW LKDQVSIATG GSKDTVPKIW DIRSLDRDVS PIGPLPQPAG QVGGNCAMKW 180 YCGRYCKDEN DTIFSVYTES SLQLQQRLEG ITSLSQDDRG TLLSASCKDN RIYLYNTLQL 240 ERGPLRSYEG GTLSSYMKAA ISPDALNIAS GSKEGNIYIS KVNKPHEQPT ILFPRAGENA 300 SLVDWFEYGI KIIQKWNKEV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA6225 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2Z6NLA2 | 3e-85 | A0A2Z6NLA2_TRISU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 5e-33 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA6225 |