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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Tp57577_TGAC_v2_mRNA6179 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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| Family |
ZF-HD |
| Protein Properties |
Length: 294aa MW: 32402.5 Da PI: 6.5622 |
| Description |
ZF-HD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA6179 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | ZF-HD_dimer | 100.2 | 1.5e-31 | 205 | 260 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
vrY+eClkNhAa++Gg+a+DGCgEfmps ge+gt++al+C+AC CHRnFHR+eve
Tp57577_TGAC_v2_mRNA6179 205 VVRYRECLKNHAAAMGGNATDGCGEFMPS-GEQGTIEALNCSACHCHRNFHRKEVEG 260
79**************************9.999*********************976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MELSSSQDGD IPIPIINNTD NNYGVSSNGH AQHHMLHHHH HHVHDHPPTL HHNHNHGNII 60
ISSSSTAAAV PVAVVPQNPS INGTTTTTTS MQAAVSGVEL DHDHSSYKKS SSSSVVRXXX 120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180
MQAAVSGVEL DHDHSSYKKS SSSSVVRYRE CLKNHAAAMG GNATDGCGEF MPSGEQGTIE 240
ALNCSACHCH RNFHRKEVEG DSTEEDSYYH HNHNXLQQAA PPPQHEEIHV TSS*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JF767894 | 2e-37 | JF767894.1 Trifolium alexandrinum microsatellite TaSSR397 sequence. |
