PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA6171

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 160aa MW: 17990.3 Da PI: 9.8335

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA6171	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	30	52	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC CgksF L H ++H Tp57577_TGAC_v2_mRNA6171 30 FKCDLCGKSFCYGNALSGHKSSH 52 89*****************9998 PP
2	zf-C2H2	14	0.00015	95	115	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F+++ L+ H+r+H Tp57577_TGAC_v2_mRNA6171 95 CQICKKFFPSNKALHGHMRSH 115 77******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.8E-4	28	53	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.6E-6	28	67	No hit	No description
Pfam	PF13912	2.4E-7	30	55	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	12.258	30	57	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.072	30	52	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	32	52	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.88E-5	75	121	No hit	No description
PROSITE profile	PS50157	9.182	92	120	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.1	93	115	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.8E-6	94	117	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	94	115	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MRKKSIPSCS FHNPVSSINH ANLQGLTRMF KCDLCGKSFC YGNALSGHKS SHKKQKTHHH 60 DAINKGTTIN ITWSLSSSSS SPHHDDNEKQ EHSCCQICKK FFPSNKALHG HMRSHKRDVK 120 KVIHPSPTTS SLEHNNDVDE DRFLLRASVI DLSKYFPQV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA6171

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3LXB1	1e-102	A0A2K3LXB1_TRIPR; C2H2 zinc finger protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA6171