PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6040
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 623aa    MW: 70273.6 Da    PI: 4.7397
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6040genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.7e-52571831127
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               lp GfrF+Ptdee++++yL++k++g+  e+  vi+evd++k+ePwdLp  + v++++ ew+fF+++d+ky++g+r nrat++gyW
  Tp57577_TGAC_v2_mRNA6040  57 LPLGFRFRPTDEEVIDYYLRQKINGNGDEV-WVIREVDVCKWEPWDLPdlSVVRNKDPEWFFFCPQDRKYPNGSRLNRATTHGYW 140
                               699************************999.89**************96447777888*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                               katgkd++++s +++l+g+kktLvfy grapkg++t+Wvmheyr
  Tp57577_TGAC_v2_mRNA6040 141 KATGKDRRIKS-GNTLIGMKKTLVFYAGRAPKGKRTNWVMHEYR 183
                               ***********.999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-6052207IPR003441NAC domain
PROSITE profilePS5100556.0257207IPR003441NAC domain
PfamPF023654.7E-2758183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MLSNRSISSS NSFFFLSFFL SFFLSFFFSS RSVXXXXXXX XXPPHAEELA VLSLNKLPLG  60
FRFRPTDEEV IDYYLRQKIN GNGDEVWVIR EVDVCKWEPW DLPDLSVVRN KDPEWFFFCP  120
QDRKYPNGSR LNRATTHGYW KATGKDRRIK SGNTLIGMKK TLVFYAGRAP KGKRTNWVMH  180
EYRPTLKELD GTNPGQNPYV ICRLFKKLDE SLESSNCGEV EQTTSNPTSA EYSPEDIQSD  240
LNMVPVSSSP ATEDYRHLAA IPENSEEAIS NVITLADCYS DACNASDAQY QIVEVPAAED  300
DQLLNLDIFE DPQFEPLDDK LFSPVHAHFP REFNYQPNTE FEFQYGTNEF QYGTNETDVS  360
HFFNSAVNWD EFSYEASSSC FLSHKDNGSC SGSDAEMAKT TMHLQADSGN SDVGLFQNNS  420
QMTFSTDFNI GQTPAVVNEY EQSTNLTARG DTGIMSRTQH GQSEQPNMNP QGSAPRRIQL  480
EEFVTHSLAS EETIKDESCA PEYEQSRDTV VQGGTGIRVR TRQGRNEQPN MNPVMQAQGS  540
APRRLRLGGF VTRSIVSEET TKNESSTPEN PNSETIIPTV LGRRVRYTSK RSSNRSMWFS  600
VLAVSATVLV SLVLLVNIWG YT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-445721015171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640024.10.0NAC domain-containing protein 62 isoform X1
TrEMBLA0A2K3P0F70.0A0A2K3P0F7_TRIPR; NAC domain-containing protein
STRINGAES984750.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-97NAC transcription factor-like 9