PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

CAMTA

Protein Properties

Length: 872aa MW: 98596.6 Da PI: 8.1249

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA5963	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	162.7	6.4e-51	32	147	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYah 87 + k+rwl+++ei aiL n++ ++++ ++ + pksg+++L++rk++r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah Tp57577_TGAC_v2_mRNA5963 32 EAKSRWLRPNEIQAILSNHKYFTIHVKPLHLPKSGTVVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAH 116 459******************************************************************************** PP CG-1 88 seenptfqrrcywlLeeelekivlvhylevk 118 +++np+f rrcywlL+++le+ivlvhy+e++ Tp57577_TGAC_v2_mRNA5963 117 GQDNPSFVRRCYWLLDKSLEHIVLVHYRETQ 147 **************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.318	26	152	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.4E-72	29	147	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.8E-45	32	145	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	3.78E-13	329	415	IPR014756	Immunoglobulin E-set
PROSITE profile	PS50297	16.335	498	627	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.34E-18	499	629	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.06E-14	500	623	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.8E-16	505	627	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.8E-7	506	593	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.301	564	596	IPR002110	Ankyrin repeat
SMART	SM00248	1.2E-5	564	593	IPR002110	Ankyrin repeat
SMART	SM00248	1100	603	634	IPR002110	Ankyrin repeat
SMART	SM00015	75	674	696	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.961	675	704	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	41	708	730	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.346	728	757	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	3.6E-4	750	772	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.146	751	775	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.9E-4	752	772	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	33	818	840	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.675	820	848	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 872 aa Download sequence Send to blast
MMAQNLMGQL VGSEIHGFHT LRDLDVGETL EEAKSRWLRP NEIQAILSNH KYFTIHVKPL 60 HLPKSGTVVL FDRKMLRNFR KDGHNWKKKN DGKTVKEAHE HLKVGNEERI HVYYAHGQDN 120 PSFVRRCYWL LDKSLEHIVL VHYRETQESQ GSPVTPVNSN SSSTADPTTP WILSEDLDSG 180 TNSAYTNGLN GNSTVESHEQ KLHELNTLDW DDLVASNANT PTIHNGGNEP AFYQLNQSLL 240 NGSFGNVPSF SNPTPPESGI SHVSYSFPES LQNQNSFGTW MNNAITDTTC SVEASALESS 300 IPSSVHDPFS SLLMDNNQQS SLPDQVFHLT EVAPAWASST EKTKVLVTGY FHNDYRHLAK 360 ANLVCICGET SVPVEIVQVG VYRCWVSPQS PGFVNLFLSF DGHKPISQVV NFEYRTPILH 420 DPAASMEETY NWIEFRLQTR LSNLLFTTPK TIDVFSSKVS PTALKETKKF ASKTLFISKS 480 LKHFMKSSDA NAIPYPHAKN TLFEIALKNK LREWLLERIV LGSKVTEYDA QGQGVLHLCT 540 LLGYTWAIAL FSWAGLSLDF RDKFGWTALH WAAYNGMEKM VATLLSSGAK PNLVTDPTPQ 600 NPGGCTAADL AYMRGYDGLA AYLSEKGLVE QFNDMSLAGN ISGSLDTSTN DPVNPENLTE 660 DQMHLKDTLA AYRTTAEAAA RIQAAFREHS LKLRYQSVQF LSPEEEARQI VAAMKIQHAF 720 RNFETRKAMA AAARIQYKFR SWKLRREFLN MRRQAIKIQA AFRGFQMRRD YRKILWSVGI 780 LEKVILRWRL KRKGFRGLEE SDVEEDFFKT GRKQAEERVE RSVVRVQAMF RSKKAQQEYS 840 RMKMAHSQAK LELELEELIN SDVDMSTPKT S*

Sequence ? help Back to Top

Protein Sequence Length: 872 aa Download sequence Send to blast

MMAQNLMGQL VGSEIHGFHT LRDLDVGETL EEAKSRWLRP NEIQAILSNH KYFTIHVKPL  60
HLPKSGTVVL FDRKMLRNFR KDGHNWKKKN DGKTVKEAHE HLKVGNEERI HVYYAHGQDN  120
PSFVRRCYWL LDKSLEHIVL VHYRETQESQ GSPVTPVNSN SSSTADPTTP WILSEDLDSG  180
TNSAYTNGLN GNSTVESHEQ KLHELNTLDW DDLVASNANT PTIHNGGNEP AFYQLNQSLL  240
NGSFGNVPSF SNPTPPESGI SHVSYSFPES LQNQNSFGTW MNNAITDTTC SVEASALESS  300
IPSSVHDPFS SLLMDNNQQS SLPDQVFHLT EVAPAWASST EKTKVLVTGY FHNDYRHLAK  360
ANLVCICGET SVPVEIVQVG VYRCWVSPQS PGFVNLFLSF DGHKPISQVV NFEYRTPILH  420
DPAASMEETY NWIEFRLQTR LSNLLFTTPK TIDVFSSKVS PTALKETKKF ASKTLFISKS  480
LKHFMKSSDA NAIPYPHAKN TLFEIALKNK LREWLLERIV LGSKVTEYDA QGQGVLHLCT  540
LLGYTWAIAL FSWAGLSLDF RDKFGWTALH WAAYNGMEKM VATLLSSGAK PNLVTDPTPQ  600
NPGGCTAADL AYMRGYDGLA AYLSEKGLVE QFNDMSLAGN ISGSLDTSTN DPVNPENLTE  660
DQMHLKDTLA AYRTTAEAAA RIQAAFREHS LKLRYQSVQF LSPEEEARQI VAAMKIQHAF  720
RNFETRKAMA AAARIQYKFR SWKLRREFLN MRRQAIKIQA AFRGFQMRRD YRKILWSVGI  780
LEKVILRWRL KRKGFRGLEE SDVEEDFFKT GRKQAEERVE RSVVRVQAMF RSKKAQQEYS  840
RMKMAHSQAK LELELEELIN SDVDMSTPKT S*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA5963

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC126778	0.0	AC126778.9 Medicago truncatula clone mth2-32j21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003594790.3	0.0	calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2K3P0E2	0.0	A0A2K3P0E2_TRIPR; Calmodulin-binding transcription activator 5-like protein
STRING	AES65041	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA5963

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]