![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA5830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 646aa MW: 73040.2 Da PI: 5.8324 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 362.9 | 4.5e-111 | 277 | 642 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 + L++cA+av+s d++++++lL+++++++s+ gd +qRla+yf+++L+ rl+ ++ + ++ + + + l+a+klf Tp57577_TGAC_v2_mRNA5830 277 TMLTQCAQAVASYDQRNTNELLKQIRQHSSQFGDGLQRLAHYFANGLEIRLSA------ETPSYKPLDMATAGDMLKAYKLFITS 355 579*************************************************9......444444444445789*********** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 sP+ ++++++ ++I + ve+e+ vHiiDf+i +G+QWp+L+++L+ Rp+gpp+lRiTg++ p++g +e++eetg+rL+++++ Tp57577_TGAC_v2_mRNA5830 356 SPLQRLTNMLLTKTIFRLVENESSVHIIDFGICYGFQWPCLIKKLSLRPGGPPKLRITGIDLPRAGfrPAERVEETGRRLENYCK 440 ****************************************************************99******************* PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 +++vpfe+n +a+++e++++e+L+++++E ++V++ ++l++l+de+v+ + +r+++Lkl+++++Pk++ + + +++++ Fl+ Tp57577_TGAC_v2_mRNA5830 441 KFDVPFEYNC-IAHKWETIRIEDLKIDRNEITVVSCLYRLKNLPDETVAANCPREALLKLIRKINPKIFFHGVVNGSYSAPFFLT 524 **********.799*********************************************************************** PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 rf eal+++s+lfd++ea++pre+ +r ++E+el+gr++ nv+acegaer+er et+++W+ r ++aGF++++++++ +++ k + Tp57577_TGAC_v2_mRNA5830 525 RFREALYHFSSLFDMFEANVPREDTQRLMLEKELFGRDAINVIACEGAERVERPETYKQWQLRNRRAGFRQIRFDSDLVNETKVM 609 ************************************************************************************* PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++ + + + v+e+ ++++lgWk+r L ++SaW Tp57577_TGAC_v2_mRNA5830 610 VKREYHKDFAVDEDGKWVLLGWKGRVLNALSAW 642 *****888************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.288 | 249 | 623 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-108 | 277 | 642 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 646 aa Download sequence Send to blast |
MLSPNAFLQD FCVPDTVNPV TNGFELEDSS SSPSSVTSSN GESSKGTRYS NYILGYISDI 60 LMDEEDDLEL KPCMLQECLR LQAAEKSFYD VLGHNYPNSS CEDTTNTDGN FSRGTASFES 120 NSSSCSTDNS YESDWVNHAG EFDCSSLQLQ THVVEQNNFN VTEAANGIHN GCWNAIQPGM 180 VEEISTSVVP REKRSHKMNG DDTWNEQEGR GSKLSAIFSD ELEPPEILEE VLLCQAGRTQ 240 NQQASHNVNS GGKAKRTGSR SKKVSTTNNA PAVDLWTMLT QCAQAVASYD QRNTNELLKQ 300 IRQHSSQFGD GLQRLAHYFA NGLEIRLSAE TPSYKPLDMA TAGDMLKAYK LFITSSPLQR 360 LTNMLLTKTI FRLVENESSV HIIDFGICYG FQWPCLIKKL SLRPGGPPKL RITGIDLPRA 420 GFRPAERVEE TGRRLENYCK KFDVPFEYNC IAHKWETIRI EDLKIDRNEI TVVSCLYRLK 480 NLPDETVAAN CPREALLKLI RKINPKIFFH GVVNGSYSAP FFLTRFREAL YHFSSLFDMF 540 EANVPREDTQ RLMLEKELFG RDAINVIACE GAERVERPET YKQWQLRNRR AGFRQIRFDS 600 DLVNETKVMV KREYHKDFAV DEDGKWVLLG WKGRVLNALS AWVPT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-47 | 281 | 644 | 24 | 379 | Protein SCARECROW |
5b3h_D | 4e-47 | 281 | 644 | 24 | 379 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA5830 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465416.1 | 0.0 | scarecrow-like protein 30 | ||||
TrEMBL | A0A072VCY3 | 0.0 | A0A072VCY3_MEDTR; GRAS family transcription factor | ||||
STRING | AES67628 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-158 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA5830 |