PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA5798

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 652aa MW: 74377.7 Da PI: 5.4621

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA5798	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	345.7	7.6e-106	282	648	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 + L++cA+av+s d++++++lL+++++++s +gd +qRla+yf+++L+ rla ++ + ++ + + + l+a+klf+ Tp57577_TGAC_v2_mRNA5798 282 TMLTQCAQAVASYDQRNTNELLKHIRQHSSAYGDGLQRLAHYFANGLEIRLAA------ETPSYKPLDVATAGDMLKAYKLFVTS 360 579***********************************************9......444444444445679******* PP GRAS 88 sPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169 sP+ ++++++ ++I + v++e + vHiiDf+i +G+QWp+L++ L+ Rp+gp +lRiTg++ p++g +e++eetg+rL +++ Tp57577_TGAC_v2_mRNA5798 361 SPLQRMTNMLLTNTIIDIVKNEsSSVHIIDFGICYGFQWPCLIKRLSLRPGGPLKLRITGIDLPQAGfrPAERVEETGRRLGNYC 445 *****************9899*************************************9************** PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 ++++vpfe+n +a+++e+++le+L+++++E + V++ ++l++l+de+v+++ +r+++Lkl+++++Pk++ + + +++++ Fl Tp57577_TGAC_v2_mRNA5798 446 KKFNVPFEYNC-IAQKWETIRLEDLKIDRNEITLVSCLYRLKNLPDETVAVNCPREALLKLIRKINPKIFFHGVVNGSYSAPYFL 529 *******.7******************************************************************** PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 +rf eal+++s+lfd++ea++pre+ +r ++E l+gr++ nv+acegaer+er et+++W+ r ++aGFk+++l+ + +++ Tp57577_TGAC_v2_mRNA5798 530 TRFREALYHFSSLFDMFEANVPREDPQRLMLESSLFGRDAINVIACEGAERVERPETYKQWQIRNRRAGFKQIRLDPELVNETIK 614 *************************************************************************99988888 PP GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++k + + + v+e+ +++++gWk+r L+++SaW Tp57577_TGAC_v2_mRNA5798 615 MVKKEYHEDFLVDEDGKWILQGWKGRILYALSAW 648 888877788*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.019	254	629	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-103	282	648	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence Send to blast
MLSKNTFLQD FSVPNTVTNG FELEDSSSSP SSVTSSYGNY EHTRYSNNIL RYINDILMDE 60 EYDLENKPCM LQECLRLQAA EKSFYDVLGQ NYPHSSCDDS TDPDGNFGRA TSFESNSSSC 120 TTDNSYECDW INLVGDYDSP SLQLHTPLVK PNYADLTEPD PVVIEQQSAS HFQNGTWSWN 180 DIHKVMVAEV SASLAPREKR RHEINDDESC DEQEGRGSKI SAIFSDELEP PEILDEVLLY 240 QSGRTKNQQQ LQNLDSGRKS KATRSQPRKV SNNNATAVDL WTMLTQCAQA VASYDQRNTN 300 ELLKHIRQHS SAYGDGLQRL AHYFANGLEI RLAAETPSYK PLDVATAGDM LKAYKLFVTS 360 SPLQRMTNML LTNTIIDIVK NESSSVHIID FGICYGFQWP CLIKRLSLRP GGPLKLRITG 420 IDLPQAGFRP AERVEETGRR LGNYCKKFNV PFEYNCIAQK WETIRLEDLK IDRNEITLVS 480 CLYRLKNLPD ETVAVNCPRE ALLKLIRKIN PKIFFHGVVN GSYSAPYFLT RFREALYHFS 540 SLFDMFEANV PREDPQRLML ESSLFGRDAI NVIACEGAER VERPETYKQW QIRNRRAGFK 600 QIRLDPELVN ETIKMVKKEY HEDFLVDEDG KWILQGWKGR ILYALSAWVP A*

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence Send to blast

MLSKNTFLQD FSVPNTVTNG FELEDSSSSP SSVTSSYGNY EHTRYSNNIL RYINDILMDE  60
EYDLENKPCM LQECLRLQAA EKSFYDVLGQ NYPHSSCDDS TDPDGNFGRA TSFESNSSSC  120
TTDNSYECDW INLVGDYDSP SLQLHTPLVK PNYADLTEPD PVVIEQQSAS HFQNGTWSWN  180
DIHKVMVAEV SASLAPREKR RHEINDDESC DEQEGRGSKI SAIFSDELEP PEILDEVLLY  240
QSGRTKNQQQ LQNLDSGRKS KATRSQPRKV SNNNATAVDL WTMLTQCAQA VASYDQRNTN  300
ELLKHIRQHS SAYGDGLQRL AHYFANGLEI RLAAETPSYK PLDVATAGDM LKAYKLFVTS  360
SPLQRMTNML LTNTIIDIVK NESSSVHIID FGICYGFQWP CLIKRLSLRP GGPLKLRITG  420
IDLPQAGFRP AERVEETGRR LGNYCKKFNV PFEYNCIAQK WETIRLEDLK IDRNEITLVS  480
CLYRLKNLPD ETVAVNCPRE ALLKLIRKIN PKIFFHGVVN GSYSAPYFLT RFREALYHFS  540
SLFDMFEANV PREDPQRLML ESSLFGRDAI NVIACEGAER VERPETYKQW QIRNRRAGFK  600
QIRLDPELVN ETIKMVKKEY HEDFLVDEDG KWILQGWKGR ILYALSAWVP A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-43	286	650	25	380	Protein SCARECROW
5b3h_A	2e-43	286	650	24	379	Protein SCARECROW
5b3h_D	2e-43	286	650	24	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA5798

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC183753	0.0	AC183753.4 Medicago truncatula chromosome 2 BAC clone mth2-26g14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013465416.1	0.0	scarecrow-like protein 30
TrEMBL	A0A072VCY3	0.0	A0A072VCY3_MEDTR; GRAS family transcription factor
STRING	AES67628	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-167	GRAS family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA5798